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In 1986 he joined the faculty of Maharaja Sayajirao University (MSU) as Professor and became Head of the Department of Microbiology (1996–2001) and the Director of Centre for Genome Research of the University (Now renamed as the Dr Bharat Chattoo Genome Research Centre),<ref name="auto">{{Cite web|url=http://www.bcmsu.ac.in/introduction.htm|title=Dr. Chattoo's Introduction|website=www.bcmsu.ac.in|access-date=2017-10-30}}</ref> since 2001.
From August 2001 to 2004 he also took responsibility as the Founding Vice-Chancellor of Shri Mata Vaishno Devi University (Jammu) to conceptualize and establish the new University, at Katra, near Jammu.{{cn}}▼
▲From August 2001 to 2004 he also took responsibility as the Founding Vice-Chancellor of Shri Mata Vaishno Devi University (Jammu) to conceptualize and establish the new University, at Katra, near Jammu.
In the meantime, at Baroda he established a Cluster Innovation Centre to encourage the interface of industry and entrepreneurship in Gujarat.<ref>{{Cite news|url=https://timesofindia.indiatimes.com/city/vadodara/MSU-to-set-up-cluster-innovation-centre/articleshow/11036467.cms|title=MSU to set up cluster innovation centre - Times of India|work=The Times of India|access-date=2017-10-30}}</ref>
His laboratory has successfully expressed therapeutic proteins of pharmaceutical interest such as Hepatitis B surface antigen and human epidermal growth factor in non-conventional yeasts and transferred the know-how to the industry.{{cn}}
He received the National Technology award at the Technology Day Programme on 11 May 2001 from the Vice President of India for transfer of technologies to the industry. He was awarded the Rockefeller Foundation Biotechnology career fellowship and the STA fellowship from Japan Science and Technology Corporation.{{cn}}
His active research collaborations included
He served on several expert committees of the Government of India and was a member of the Gujarat Biotechnology Council.{{cn}}
Prof Chattoo was the team leader of the first Indian team that participated in the International Biology Olympiad held at Antalya, Turkey in 2000.{{cn}}
== Awards and fellowships ==
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