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Throughout most of the history of New York City, and [[New Amsterdam]] before it, the East River has been the receptacle for the city's garbage and sewage. "Night men" who collected "night soil" from outdoor privies would dump their loads into the river, and even after the construction of the [[Croton Aqueduct]] (1842) and then the [[New Croton Aqueduct]] (1890) gave rise to [[Tap water|indoor plumbing]], the waste that was flushed away into the [[Storm drain|sewer]]s, where it mixed with ground runoff, ran directly into the river, untreated. The sewers terminated at the slips where ships docked, until the waste began to build up, preventing dockage, after which the outfalls were moved to the end of the piers. The "landfill" which created new land along the shoreline when the river was "wharfed out" by the sale of "water lots" was largely garbage such as bones, offal, and even whole dead animals, along with excrement – human and animal.<ref>Steinberg, 23–28, ''passim''</ref><ref>Burrows and Wallace, p.185</ref> The result was that by the 1850s, if not before, the East River, like the other waterways around the city, was undergoing the process of [[eutrophication]] where the increase in [[nitrogen]] from excrement and other sources led to a decrease in free [[oxygen]], which in turn led to an increase in [[phytoplankton]] such as [[algae]] and a decrease in other life forms, breaking the area's established food chain. The East River became very polluted, and its animal life decreased drastically.<ref>Steinberg, pp.118–19</ref>
 
In an earlier time, one person had described the transparency of the water: "I remember the time, gentlemen, when you could go in twelve feet of water and you could see the pebbles on the bottom of this river." As the water got more polluted, it darkened, underwater vegetation (such as [[photosynthesis|photosynthesizing]] [[seagrass]]) began dying, and as the [[seagrass]] beds declined, the many associated species of their ecosystems declined as well, contributing to the decline of the river. Also harmful was the general destruction of the once plentiful [[Oyster|oyster beds]] in the waters around the city,<ref group=notes>Oysters were so plentiful in New Amsterdam and early New York that they were considered to be food for the poor, although the rich also ate them in great numbers. They were sold in specialized "oyster shops" and by vendors on the street, some of which were paved with their shells. Pearl Street was named after the piles of oysters left there by the Native Americans of the area. "Enjoy the oysters" was often said to a person planning on traveling to New York City, so strong was the bivalve as an icon of the city. It was only after the collapse of the local oyster beds, by around 1920, that oysters became scarce, and a delicacy only affordable by the rich.{{parabr}}{{nb5}}Burrows and Wallace, pp.460, 798, 816<br>{{nb5}}Kurlansky, Mark "oysters" in {{cite enc-nyc2}}, pp.963–964<br>{{nb5}}Steinberg, pp.7, 170–71</ref> and the over-fishing of [[menhaden]], or [[Menhaden|mossbunker]], a small silvery fish which had been used since the time of the Native Americans for fertilizing crops – however it took 8,000 of these schooling fish to fertilize a single acre, so mechanized fishing using the [[Seine fishing|purse seine]] was developed, and eventually the menhaden population collapsed. Menhaden feed on phytoplankton, helping to keep them in check, and are also a vital step in the food chain, as [[bluefish]], [[striped bass]] and other fish species which do not eat phytoplankton feed on the menhaden. The oyster is another filter feeder: oysters purify 10 to 100 gallons a day, while each menhaden filters four gallons in a minute, and their schools were immense: one report had a farmer collecting 20 oxcarts worth of menhaden using simple fishing nets deployed from the shore. The combination of more sewage, due to the availability of more potable water – New York's water consumption ''per capita'' was twice that of Europe – indoor plumbing, the destruction of filter feeders, and the collapse of the food chain, damaged the ecosystem of the waters around New York, including the East River, almost beyond repair.<ref>Steinberg, pp.166–73</ref>
 
Because of these changes to the ecosystem, by 1909, the level of dissolved-oxygen in the lower part of the river had declined to less than 65%, where 55% of saturation is the point at which the amount of fish and the number of their species begins to be affected.<ref>Steinberg, pp.161, 163–64</ref> Only 17 years later, by 1926, the level of dissolved oxygen in the river had fallen to 13%, below the point at which most fish species can survive.<ref>Steinberg, p.177</ref>