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@Ecogenomics

Australian Centre for Ecogenomics

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  1. GTDBTk GTDBTk Public

    GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

    Python 450 82

  2. CheckM CheckM Public

    Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes

    Python 329 73

  3. gtdb-species-clusters gtdb-species-clusters Public

    Toolkit for establishing, updating, and validating GTDB species clusters

    Python 19 3

  4. BamM BamM Public

    Metagenomics-focused BAM file manipulation

    C 16 7

  5. GTDBNCBI GTDBNCBI Public

    The GTDB provides the software infrastructure for working with a large collection of genomic resources. The major goal of this initiative is to provide a phylogenetically consistent taxonomy for ar…

    Python 9 2

  6. Mannotator Mannotator Public archive

    Microbial annotation pipeline - in progress

    Perl 4 5

Repositories

Showing 10 of 37 repositories
  • gtdb-release-tk Public

    Toolkit for updating the GTDB to the next release and generating data files for the GTDB website.

    Ecogenomics/gtdb-release-tk’s past year of commit activity
    Python 1 GPL-3.0 1 0 0 Updated Jul 2, 2024
  • CheckM Public

    Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes

    Ecogenomics/CheckM’s past year of commit activity
    Python 329 GPL-3.0 73 12 1 Updated Jun 25, 2024
  • gtdb.ecogenomic.org Public

    https://gtdb.ecogenomic.org/

    Ecogenomics/gtdb.ecogenomic.org’s past year of commit activity
    Vue 2 1 7 0 Updated Jun 23, 2024
  • GTDBTk Public

    GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

    Ecogenomics/GTDBTk’s past year of commit activity
    Python 450 GPL-3.0 82 12 0 Updated May 17, 2024
  • api.gtdb.ecogenomic.org Public

    https://api.gtdb.ecogenomic.org/

    Ecogenomics/api.gtdb.ecogenomic.org’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated May 1, 2024
  • gtdb-species-clusters Public

    Toolkit for establishing, updating, and validating GTDB species clusters

    Ecogenomics/gtdb-species-clusters’s past year of commit activity
    Python 19 3 0 0 Updated Apr 10, 2024
  • data.gtdb.ecogenomic.org Public

    https://data.gtdb.ecogenomic.org/

    Ecogenomics/data.gtdb.ecogenomic.org’s past year of commit activity
    XSLT 0 0 0 0 Updated Feb 23, 2024
  • gtdb-migration-tk Public

    Toolkit for updating the GTDB to the next release and test data

    Ecogenomics/gtdb-migration-tk’s past year of commit activity
    Python 1 0 0 0 Updated Jan 11, 2024
  • gtdb_precurate Public

    Automatic pre-curation of GTDB trees.

    Ecogenomics/gtdb_precurate’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Dec 12, 2023
  • GTDBNCBI Public

    The GTDB provides the software infrastructure for working with a large collection of genomic resources. The major goal of this initiative is to provide a phylogenetically consistent taxonomy for archaea and bacteria.

    Ecogenomics/GTDBNCBI’s past year of commit activity
    Python 9 GPL-3.0 2 17 0 Updated Oct 30, 2023
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