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<!-- # John Wiley & Sons, Inc. # -->

<!-- # # -->

<!-- # Book: Algorithms in Bioinformatics: Theory and Implementation # -->

<!-- # Author: Dr. Paul A. Gagniuc # -->

<!-- # # -->

<!-- # Institution: # -->

<!-- # University Politehnica of Bucharest # -->

<!-- # Faculty of Engineering in Foreign Languages # -->

<!-- # Department of Engineering in Foreign Languages # -->

<!-- # # -->

<!-- # Area: European Union # -->

<!-- # Date: 04/01/2021 # -->

<!-- # # -->

<!-- # Cite this work as: # -->

<!-- # Paul A. Gagniuc. Algorithms in Bioinformatics: Theory and Implementation. John Wiley & Sons, 2021, ISBN: 9781119697961. # -->

<!-- # # -->

<!-- ############################################################################################################################## -->

<script>

var r1 = i - 1;

var r2 = j - 1;

// Relative positioning of sequences

var tM='';

var tS='';

// Add to the end

AlignmentA = AlignmentA + s0.substr(x-1, n_0 - x);

AlignmentB = AlignmentB + s1.substr(y-1, n_1 - y);

// Add to the beginning

AlignmentA = s0.substr(0, r1) + AlignmentA;

AlignmentB = s1.substr(0, r2) + AlignmentB;

if(r1>r2){

var v = r1 - r2;

for(var u=1; u<=v; u++) {tS = tS + e;}

for(var u=1; u<=v+r2; u++) {tM = tM + e;}

AlignmentB = tS + AlignmentB;

AlignmentM = tM + AlignmentM;

} else {

var v = r2 - r1;

for(var u=1; u<=v; u++) {tS = tS + e;}

for(var u=1; u<=v+r1; u++) {tM = tM + e;}

AlignmentA = tS + AlignmentA;

AlignmentM = tM + AlignmentM;

}

</script>