Are you looking for great tools to analyze your HiFi data?
hificnv– Copy number variant caller and depth visualization utilityhifihla– HLA star-callinghiphase– Small variant, structural variant, and short tandem repeat phasing toolisoseq– Scalable De Novo Isoform Discoverymethbat– Battery of methylation toolspangu– Star-typer for long-read PGx applicationsparaphase– Caller for highly homologous genespbaa– Amplicon Analysispbfusion– Fusion gene caller for Iso-Seq sequencing data.pbmm2– A minimap2 frontend for PacBio native data formatspbsv– Structural variant calling and analysis toolspbtk– PacBio BAM toolkitskera– Kinnex HiFi read splitterstarphase– Phase-aware pharmacogenomic diplotypersvpack– Filtering, comparing, and annotating structural varianttrgt– Tandem repeat genotyping and visualization
How about complete workflows for your HiFi data?
- Amplicon Workflow
- Full-length 16S analysis - Full-length 16S sequences to report
- Metagenomic analyses
- PacBio Pipelines – Common Tasks and Workflows
- Target enrichment workflow
- HiFi somatic WDL - Call somatic variants on tumor/normal WGS data
Help pages for tools that are running on our long-read platform?
This list is work in progress, check out our repositories for more greatness!