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@SysBioChalmers

Systems and Synthetic Biology at Chalmers University of Technology

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  1. Human-GEM Human-GEM Public

    The generic genome-scale metabolic model of Homo sapiens

    MATLAB 98 41

  2. yeast-GEM yeast-GEM Public

    The consensus GEM for Saccharomyces cerevisiae

    MATLAB 94 46

  3. RAVEN RAVEN Public

    The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.

    MATLAB 101 52

  4. GECKO GECKO Public

    Toolbox for including enzyme constraints on a genome-scale model.

    MATLAB 67 51

  5. DLKcat DLKcat Public

    Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic models (ecGEMs) reconstruction

    Python 128 54

Repositories

Showing 10 of 102 repositories
  • Human-GEM Public

    The generic genome-scale metabolic model of Homo sapiens

    SysBioChalmers/Human-GEM’s past year of commit activity
    MATLAB 98 CC-BY-4.0 41 120 8 Updated Nov 5, 2024
  • sysbio.se Public

    The sysbio.se source code

    SysBioChalmers/sysbio.se’s past year of commit activity
    CSS 0 MIT 2 1 0 Updated Nov 1, 2024
  • CellFactory-ecYeastGEM Public

    Code and data for in silico strain design for enhanced production of +100 typical bio-products with yeast as a cell-factory. Predictions are based on the ecYeastGEM model avaiable at ecModels.

    SysBioChalmers/CellFactory-ecYeastGEM’s past year of commit activity
    MATLAB 0 CC-BY-4.0 2 6 1 Updated Oct 30, 2024
  • RAVEN Public

    The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.

    SysBioChalmers/RAVEN’s past year of commit activity
    MATLAB 101 52 8 1 Updated Oct 29, 2024
  • yeast-GEM Public

    The consensus GEM for Saccharomyces cerevisiae

    SysBioChalmers/yeast-GEM’s past year of commit activity
    MATLAB 94 CC-BY-4.0 46 30 (6 issues need help) 2 Updated Oct 28, 2024
  • GECKO Public

    Toolbox for including enzyme constraints on a genome-scale model.

    SysBioChalmers/GECKO’s past year of commit activity
    MATLAB 67 MIT 51 11 2 Updated Oct 19, 2024
  • GAGome-BCa Public
    SysBioChalmers/GAGome-BCa’s past year of commit activity
    HTML 0 0 0 0 Updated Aug 28, 2024
  • Yarrowia_Multifactor Public

    Data and scripts used for the RNA-seq analysis of Yarrowia lipolytica (fat-free strain and urea utilisation)

    SysBioChalmers/Yarrowia_Multifactor’s past year of commit activity
    MATLAB 1 MIT 1 0 0 Updated Jun 24, 2024
  • BrainMetabolismModeling Public

    Modeling of the energy metabolism of the brain

    SysBioChalmers/BrainMetabolismModeling’s past year of commit activity
    MATLAB 2 MIT 0 0 0 Updated Jan 14, 2024
  • hanpo-GEM Public

    Draft genome-scale model of Hansenula polymorpha (Ogataea polymorpha; Pichia angusta)

    SysBioChalmers/hanpo-GEM’s past year of commit activity
    MATLAB 5 CC-BY-4.0 1 1 0 Updated Jan 5, 2024
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