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Pull requests: broadinstitute/gatk

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Pull requests list

Fix bug when disabling optimizations #7123
#7125 opened Mar 4, 2021 by nh13 Loading…
@davidbenjamin @jamesemery
4
Some modifications for Hail output
#6928 opened Oct 29, 2020 by ldgauthier • Draft
3
Update the header of AS_FilterStatus
#6858 opened Sep 30, 2020 by DonFreed Loading…
@nalinigans
6
don't move right if feature begins on an insertion
#6389 opened Jan 17, 2020 by adamjorr Loading…
1
@adamjorr
7
Added a new flag to ReadWalkers for start position interval filtering
#6054 opened Jul 23, 2019 by jonn-smith Loading…
@droazen
3
implement heuristics that align haplotypes to reads without calling Smith-Waterman
#6015 opened Jun 21, 2019 by jonathoncohen98 Loading…
@jonathoncohen98
70
Common spark integration tests
#5723 opened Feb 26, 2019 by tomwhite Loading…
@tomwhite
3
Adding in a config file for Funcotator.
#4960 opened Jun 27, 2018 by jonn-smith Loading…
@LeeTL1220
8
Add test for index query on CRAM from Path.
#4916 opened Jun 20, 2018 by cmnbroad Loading…
@droazen
7
Test out the preview version of the next GKL (DO NOT MERGE)
#8712 opened Mar 4, 2024 by droazen Loading…
@jamesemery
2
Combining aws-java-nio-spi-for-s3 with GATK.
#8672 opened Feb 1, 2024 by DanishIntizar Loading…
2
DRAGEN Joint Detection DO NOT MERGE
#8616 opened Dec 11, 2023 by davidbenjamin Loading…
2
Add a --numeric-gt option to VariantsToTable
#8219 opened Feb 22, 2023 by lbergelson Loading…
1
2
Add GCC OpenMP library to list of GATK requirements in the README
#8196 opened Feb 10, 2023 by droazen Loading…
1
@lbergelson
6
**DO NOT MERGE** Added features for CompareReferences tool
#8163 opened Jan 18, 2023 by orlicohen Loading…
@droazen
2
expansion hunter pre processor
#7863 opened May 20, 2022 by tedsharpe Loading…
4
Clarify Gnarly required annotations
#7854 opened May 17, 2022 by ldgauthier Loading…
2
Adding scripts related to setting up haplotypecaller carrot regression tests.
#7726 opened Mar 16, 2022 by jamesemery Loading…
10
Improve GRADLE build Performance
#7561 opened Nov 12, 2021 by shisheng-1 Loading…
2
clearer documentation on use of --max-mnp-distance
#7251 opened May 12, 2021 by jethror1 Loading…
@davidbenjamin
5
Implement ReadsHtsgetData source, refactor HtsgetReader GA4GH Collaboration with GA4GH
#6662 opened Jun 16, 2020 by andersleung • Draft
72
Read bundle json preview
#6612 opened May 20, 2020 by lbergelson • Draft
@droazen @cmnbroad
2
make progress meter async
#6484 opened Mar 4, 2020 by lbergelson Loading…
2
Add annotation checks to ValidateVariants
#6272 opened Nov 20, 2019 by ldgauthier Loading…
@lbergelson @jamesemery
24
Fixing an issue in the indexing of locatable XSVs and adding test. HTSJDK PRIORITY_HIGH
#6224 opened Oct 22, 2019 by jonn-smith Loading…
@jonn-smith
2
ProTip! Updated in the last three days: updated:>2024-06-30.