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Pull requests: dib-lab/khmer

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Pull requests list

Working branch for fixing Python 3 streaming '--gzip -o -' bug.
#1367 opened May 11, 2016 by ctb Loading…
9 tasks
Fix compiler and linker warnings
#1605 opened Feb 1, 2017 by betatim Loading…
2 tasks done
14
Atomic nibble instead of mutex
#1601 opened Jan 30, 2017 by betatim Loading…
8 tasks done
7
rename consume to consume_string
#1589 opened Jan 24, 2017 by ctb Loading…
8 tasks
Experimenting with queues and threads
#1553 opened Dec 13, 2016 by betatim Loading…
8 tasks
18
Open PR for Streaming Partitioning
#1502 opened Nov 3, 2016 by camillescott Loading…
12 tasks
3
(Re?)introduce consume_fasta progress indicator
#1410 opened Jul 18, 2016 by standage Loading…
9 tasks
7
Composition of graphs - new C++ and Python classes
#1392 opened Jun 25, 2016 by ctb Loading…
9 tasks
1
Add functionality to extract unassembled reads from a data set, given an assembly
#1386 opened Jun 15, 2016 by ctb Loading…
9 tasks
1
Thread-safety for hashtable
#876 opened Mar 18, 2015 by camillescott Loading… 1.4+
14
Scalable CountMin Sketch support
#434 opened May 17, 2014 by ctb Loading… unscheduled
Added multihreaded tests for scripts with -T that did not have any before
#1346 opened Mar 19, 2016 by ghost Loading…
4 of 9 tasks
3
move multi-rename.py to scripts
#1283 opened Aug 28, 2015 by SherineAwad Loading… unscheduled
6
some clean up of sandbox/calc-median-distribution.py
#1237 opened Aug 10, 2015 by ctb Loading… unscheduled
Pylint Part Deux
#1178 opened Jul 18, 2015 by bocajnotnef Loading… unscheduled
Handle borked-but-obvious FASTQ formats with an option
#1165 opened Jul 10, 2015 by SherineAwad Loading… unscheduled
WIP: Refactor khmer's graph traversal
#1080 opened Jun 11, 2015 by camillescott Loading… unscheduled
2
introduce 1m read skip in calc-error-profile
#1003 opened May 15, 2015 by ctb Loading… unscheduled
2
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