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Data for REMM is not configured #538

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HongyuanChu opened this issue Feb 5, 2024 · 2 comments
Closed

Data for REMM is not configured #538

HongyuanChu opened this issue Feb 5, 2024 · 2 comments

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@HongyuanChu
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1707126329954
This appeared while performing "java -Xmx6g -jar ~/exomiser-cli-13.3.0/exomiser-cli-13.3.0.jar --analysis examples/NA19722_601952_AUTOSOMAL_RECESSIVE_POMP_13_29233225_5UTR_38.yml --spring.config.location=/data/chuhy/exomiser-cli-13.3.0/application.properties --assembly hg38"
The application.properties is as follows
#exomiser.data-directory=data
exomiser.data-directory=/data/chuhy/exomiser-cli-13.3.0/data
exomiser.hg19.data-version=2309
exomiser.hg38.data-version=2309
exomiser.hg19.variant-white-list-path=2309_hg19_clinvar_whitelist.tsv.gz
exomiser.hg38.variant-white-list-path=2309_hg38_clinvar_whitelist.tsv.gz
exomiser.phenotype.data-version=2309
exomiser.hg38.remm-path=ReMM.v0.4.hg38.tsv.gz
@lpsyy
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lpsyy commented Mar 9, 2024 •
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I think you should put the full path of the remm in the application properties, for example mnt/f/exomiser/exomiser-cli-13.3.0/data/2309_hg38/remm........

@julesjacobsen
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@HongyuanChu, as @ipsyy said, you need to use the full path to the ReMM.v0.4.hg38.tsv.gz file.

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3 participants
@julesjacobsen @lpsyy @HongyuanChu