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Issues list

Put singularity image and master Selma copy in /tsd/shared/bioinformatics/
#12 by oskarvid was closed Nov 30, 2019 Release 1
2
Snakemake config file - TSD
#2 by oskarvid was closed Feb 28, 2019 Release 1
2
Select specific sample from TSV file
#3 by oskarvid was closed Oct 25, 2019 Release 2
3
Support for exome interval files
#4 by oskarvid was closed Jun 24, 2019 Release 2
2
Run one sample per node
#5 by oskarvid was closed Oct 23, 2019 Release 2
4
Support for b37 reference files - TSD
#6 by oskarvid was closed May 15, 2019 Release 1
3
Change Snakemake working directory for clean input and output file handling
#7 by oskarvid was closed Feb 20, 2019 Release 1
1
File staging - TSD
#8 by oskarvid was closed May 28, 2019 Release 1
3
Sbatch script failure handling
#9 by oskarvid was closed Jun 24, 2019 Release 1
1
Documentation
#10 by oskarvid was closed Jul 10, 2019 Release 1
1
TSV file - TSD
#1 by oskarvid was closed Feb 28, 2019 Release 1
1
Figure out how to handle config options
#11 by oskarvid was closed Sep 16, 2019 Release 2
1
TSD start-workflow.sh issues
#13 by daviddolan was closed Oct 23, 2019 Release 2
3
Squeue seems to be crashing the workflow bug Something isn't working
#14 by oskarvid was closed Oct 24, 2019 Release 2
1
Clarify the purpose of the custom interval file support in the documentation
#15 by oskarvid was closed Nov 5, 2019 Release 1
1
Squeue is unstable on Colossus
#16 by oskarvid was closed Nov 25, 2019
1
Starting Selma
#17 by daviddolan was closed Feb 17, 2020
2
Disk quota on Colossus is exceeded during execution
#18 by oskarvid was closed Nov 30, 2019
5
Enhance documentation of -s option
#20 by kjellp was closed Jan 24, 2020 Release 2
1
Input folder requirements
#22 by kjellp was closed Feb 17, 2020 Release 2
2
Move current command line options to the settings file enhancement New feature or request
#23 by oskarvid was closed Feb 11, 2020 Milestone 3
1
ProTip! What’s not been updated in a month: updated:<2024-06-10.