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Issues list

do we want to include these certbot role files?
#372 opened Mar 1, 2023 by martenson updated Mar 1, 2023
Add indexes for SortMeRNA functionality usegalaxy.org tool/dependency/function fix usegalaxy.org reference data CVMFS / IDC / Refgenie
#369 opened Feb 7, 2023 by jennaj updated Feb 7, 2023
@jennaj
Add indexes for BWA-MEM2 reference data CVMFS / IDC / Refgenie wip
#368 opened Feb 3, 2023 by jennaj updated Feb 3, 2023
2 tasks
Confirm if Heatmap fixed or not functionality usegalaxy.org tool/dependency/function fix usegalaxy.org test/retest-do active tests
#205 opened Apr 8, 2019 by jennaj updated Nov 30, 2022
@jennaj
1
On usegalaxy.org, some tools fail if a history has a 'training' tag kind/bug release-testing-22.05
#361 opened Jun 17, 2022 by cat-bro updated Jun 18, 2022
3
Extract Genomic DNA versions 3.x+ do not link with built-in genome indexes functionality usegalaxy.org tool/dependency/function fix usegalaxy.org
#286 opened Feb 19, 2020 by jennaj updated Jun 16, 2022
@natefoo @jennaj
11
Test taxonomy_krona_chart 2.7.1 functionality usegalaxy.org tool/dependency/function fix usegalaxy.org
#360 opened Jun 7, 2022 by jennaj updated Jun 7, 2022
5 tasks done
@natefoo
1
Kraken2: clone indexes hosted at EU over to CMVFS reference data CVMFS / IDC / Refgenie
#359 opened Mar 29, 2022 by jennaj updated Mar 29, 2022
Same BUSCO scores for different augustus species when using v5 in the same lineage
#356 opened Mar 7, 2022 by biowackysci updated Mar 7, 2022
Execution error: ebi_search_rest_results 0.1.1 bug test/retest-fail failed retest
#353 opened Feb 9, 2022 by jennaj updated Feb 9, 2022
Execution error: ebi_metagenomics_run_downloader 0.1.0 bug test/retest-fail failed retest
#352 opened Feb 9, 2022 by jennaj updated Feb 9, 2022
BWA-meth built-in reference genomes in *.org
#348 opened Jan 5, 2022 by gallardoalba updated Jan 11, 2022
4
Allowlist: output from glimma DE Plot tool
#338 opened Apr 28, 2021 by hexylena updated Apr 28, 2021
Storage roadmap
#325 opened Jan 7, 2021 by hexylena updated Jan 7, 2021
@natefoo @kxk302
iRODS
#324 opened Jan 7, 2021 by hexylena updated Jan 7, 2021
@natefoo @kxk302
MultiQC fails when input datasets that have the same dataset name/label -- tool issue bug functionality usegalaxy.* tool/dependency/function fix all usegalaxy.*
#315 opened Nov 4, 2020 by jennaj updated Nov 4, 2020
"Apply Rule to Collection" -- py3 related? functionality usegalaxy.org tool/dependency/function fix usegalaxy.org functionality usegalaxy.* tool/dependency/function fix all usegalaxy.* test/retest-do active tests
#282 opened Feb 6, 2020 by jennaj updated Oct 21, 2020
@jennaj
3
Enhance center pane / welcome.html
#163 opened Oct 4, 2018 by nekrut updated Sep 16, 2020
@martenson @nekrut @jennaj
2
Capture tool error stats in Grafana enhancement
#178 opened Nov 19, 2018 by jennaj updated Sep 16, 2020
6
Genome Additions Master Ticket
#242 opened Jan 11, 2016 by jennaj updated Aug 31, 2020
8 of 19 tasks
@jennaj
29
wipe mako template cache on Galaxy deployment
#264 opened Oct 22, 2019 by martenson updated Jul 24, 2020
3
Scatterplot w ggplot2 (Galaxy Version 2.2.1+galaxy1) fails at usegalaxy.org functionality usegalaxy.org tool/dependency/function fix usegalaxy.org impacts tutorials training.galaxyproject.org
#298 opened Apr 29, 2020 by jennaj updated Apr 29, 2020
3
Please add DADA2-formatted reference databases to test/main reference data CVMFS / IDC / Refgenie
#273 opened Nov 27, 2019 by gregvonkuster updated Mar 30, 2020
12
MAF tools do not find indexed hg19 46-way or 100-way. CVMFS path problem? bug
#290 opened Mar 5, 2020 by jennaj updated Mar 23, 2020
3
Create Busco indexes for usegalaxy.org install usegalaxy.org tool install usegalaxy.org requested reference data CVMFS / IDC / Refgenie
#295 opened Mar 20, 2020 by jennaj updated Mar 20, 2020
5 tasks
@davebx @jennaj
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