#!/bin/bash

# Copyright (c) 2021, Google Inc.

# All rights reserved.

#

# Redistribution and use in source and binary forms, with or without modification,

# are permitted provided that the following conditions are met:

#

# 1. Redistributions of source code must retain the above copyright notice, this

# list of conditions and the following disclaimer.

#

# 2. Redistributions in binary form must reproduce the above copyright notice,

# this list of conditions and the following disclaimer in the documentation

# and/or other materials provided with the distribution.

#

# 3. Neither the name of Google Inc. nor the names of its contributors

# may be used to endorse or promote products derived from this software without

# specific prior written permission.

#

# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND

# ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED

# WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE

# DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR

# ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES

# (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;

# LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON

# ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT

# (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS

# SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

# Usage: source install.sh

#

# This script installs all the packages required to build DeepConsensus.

#

# This script will run as-is on Ubuntu 20.04.

#

# We also assume that apt-get is already installed and available.

function note_build_stage {

echo "========== [$(date)] Stage '${1}' starting"

}

# Update package list

################################################################################

note_build_stage "Update package list"

sudo -H apt-get -qq -y update

# Install pip

################################################################################

note_build_stage "Update pip"

sudo -H apt-get -y install python3-dev python3-pip

sudo -H apt-get -y update

python3 -m pip install --upgrade pip

# Update PATH so that newly installed pip is the one we actually use.

export PATH="$HOME/.local/bin:$PATH"

echo "$(pip --version)"

# Install python packages used by DeepConsensus.

################################################################################

python3 -m pip install --user -r requirements.txt

python3 -m pip install --user "tensorflow-gpu>=2.11.0"