From 854b5bfa9d5b2ab3111f1a691617da6a25de0d4c Mon Sep 17 00:00:00 2001
From: danielecook <danielecook@google.com>
Date: Fri, 30 Sep 2022 10:53:00 -0700
Subject: [PATCH] Update to Python 3.9

PiperOrigin-RevId: 478031275
---
 Dockerfile       | 4 ++--
 requirements.txt | 2 +-
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/Dockerfile b/Dockerfile
index d4b3b84..5e51289 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -12,7 +12,7 @@ RUN conda config --add channels defaults && \
     conda config --add channels bioconda && \
     conda config --add channels conda-forge
 RUN conda create -n bio \
-                    python=3.8 \
+                    python=3.9 \
                     pbcore \
                     pbbam \
                     pbccs \
@@ -28,7 +28,7 @@ RUN conda create -n bio \
                     bioconda::extracthifi \
                     bioconda::zmwfilter \
                     bioconda::pysam \
-                    bioconda::samtools=1.10 \
+                    bioconda::samtools=1.15 \
     && conda clean -a
 RUN wget https://github.com/PacificBiosciences/align-clr-to-ccs/releases/download/0.2.0/actc && \
     chmod +x actc && \
diff --git a/requirements.txt b/requirements.txt
index 6b1f215..9ef6951 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -4,7 +4,7 @@ tf-models-official>=2.10.0
 ml_collections>=0.1.0
 absl-py>=0.13.0
 protobuf<3.20,>=3.9.2,<4,>=3.13
-flatbuffers<2,>=1.12
+flatbuffers>=2.0
 keras>=2.10.0
 tensorflow-estimator>=2.10.0
 zipp>=3.1.0