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Pull requests list

PPC64 patches
#71 opened Jun 10, 2016 by yhcheng Loading…
15
Fix bam IO to take account of BAM_FPAIRED when checking BAM_FREAD1/2
#18 opened Jun 13, 2013 by mp15 Loading…
1
Added filenames to "Unmatched SAI magic" message
#20 opened Nov 12, 2013 by zestrada Loading…
Fixed output, as newlines were missing.
#22 opened Feb 6, 2014 by jvhaarst Loading…
3
Initial public release cilk version of aln.
#23 opened Feb 10, 2014 by caherzee Loading…
Multi comma-separated fastq for bwa-mem.
#24 opened Mar 26, 2014 by lindenb Loading…
1
Update bwape.c
#29 opened Jul 9, 2014 by earonesty Loading…
Standard Fastq output for pemerge
#34 opened Oct 10, 2014 by a113n Loading…
-q option to put seq/qual strings in secondary alignments
#36 opened Nov 12, 2014 by EReckase Loading…
Use allele instead of gene where appropriate (doc fix only)
#38 opened Jan 5, 2015 by heuermh Loading…
Add documentation describing the output format of out.hla.* files (doc fix only)
#39 opened Jan 5, 2015 by heuermh Loading…
3
mmap'ed access to reference files
#40 opened Jan 23, 2015 by ilveroluca Loading…
1
Adding a flag to sampe (-d) to disable pair rescuing if too many rescue attempts are made.
#12 opened Sep 30, 2012 by drio Loading…
3
Bwa-Mem and tied pair-placements
#42 opened May 6, 2015 by boukn Loading…
Allow larger chunks of reads to be processed, and estimate the insert…
#106 opened Jan 29, 2017 by rbh Loading…
bwa mem: read chunk size overflows for -t > 214
#155 opened Oct 17, 2017 by BenLangmead Loading…
bwa mem: print qtip features
#156 opened Oct 17, 2017 by BenLangmead Loading…
1
Proposed enhancement to the FAQ with a line for -M
#198 opened May 9, 2018 by mdkeehan Loading…
2
Add -C param for sampe/samse, to copy fastq comments into sam output
#203 opened May 30, 2018 by grahamgower Loading…
Fix typo: Malformated → Malformed
#212 opened Aug 2, 2018 by tskir Loading…
bwa mem 20% speedup with vector instructions (Fixed intel-extend branch)
#226 opened Nov 24, 2018 by zamaudio Loading…
1
fix incorrect secondary alignment in ksw_align
#227 opened Dec 5, 2018 by mirounga Loading…
Fix potential assertion in bntseq fails #120
#243 opened Jun 25, 2019 by yanlinlin82 Loading…
1
Update bwape.c to allow equal reads in pair to be mapped as mapped in proper pair
#259 opened Nov 25, 2019 by schultzdre Loading…
Fix kt_for() declaration parameter types
#414 opened Mar 18, 2024 by jmarshall Loading…
1
ProTip! Updated in the last three days: updated:>2024-06-28.