Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

[0.0.10] - tbd

Added

(MCMICRO) support for TMAs (such as the data of exemplar-002)
(Xenium) support for post-xenium aligned images (IF, HE)
(Visium) support for raw reads (capture locations not under tissue)

Fixed

(MERSCOPE) don't try to load unexisting elements #87
(Visium) fixed axes ordering
(Xenium) fixed index (fail on write)
(Xenium) renamed cells_as_shapes to cells_as_circles; set default to True

[0.0.9] - 2023-11-06

Fixed

(Xenium) bug when converting feature_name #81, from @fbnrst
(Visium) visium() supports file counts without dataset_id #91

[0.0.8] - 2023-10-02

Fixed

(Xenium) coerce cell id to str #64
(MERSCOPE) fix coordinate transformation #68
(MERSCOPE) Improvements/fixes: merscope reader #73

[0.0.7] - 2023-07-23

Fixed

Bugs in Xenium and MERSCOPE

[0.0.5] - 2023-06-21

Added

MERFISH reader (from @quentinblampey)
CODEX reader (from @LLehner)

Fixed

Issues on Visium reader (thanks @ilia-kats) and Xenium reader

[0.0.4] - 2023-05-23

Added

Curio reader

[0.0.3] - 2023-05-22

Merged

Merge pull request #40 from scverse/fix/categories

[0.0.2] - 2023-05-04

Changed

Revert version regex (#37)

[0.0.1] - 2023-05-04

Tested

Test installation from pypi