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Gurobi solver: buffer overflow #116
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Hi @jbedo - sorry you're having problems with the solver. The error message above (and the log you've attached) are a result of running the EDIT:: Ok I see that this is the output of the actual |
Haven't tried setting HATCHET_COMPUTE_CN_SOLVER to gurobi, but CBC works
fine with both check-solver and a real sample I've put through it.
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I believe I've solved this: though hatchet was compiled and linked against the gurobi libraries, gurobipy was not available in the python environment. Adding gurobipy has allowed |
Hi, @jbedo could you please let me know how did you run with cbc solver? I am running HATCHet v1.1.2 using cbc. However, I seem to have a problem where it's taking > 72 hrs to run after reaching the process "Running diploid with 3 clones". Other than this, I don't see any errors in the log. |
I didn't do anything special, CBC is pretty slow in this application. It
really wasn't usable on our human WGS samples, gurobi is significantly
faster.
|
I'm having issues getting
hatchet check-solver
to run, it seems to encounter a buffer overflow error:I don't think this is a gurobi licensing issue as it's a buffer overflow not the expected exception? Any suggestions on debugging?
Full log attached.
log.txt
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