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Possible bug? #121

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vineetbansal opened this issue Apr 28, 2022 · 1 comment
Closed

Possible bug? #121

vineetbansal opened this issue Apr 28, 2022 · 1 comment
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@mmyers1

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@vineetbansal
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I think config.paths.tabix here should have been config.paths.picard instead? (I see an entry added for picard in hatchet.ini)

hatchet/src/hatchet/utils/ArgParsing.py

Line 509 in 9fe16fc

parser.add_argument("-pc", "--picard", required = False, type = str, default = config.paths.tabix, help = 'Path to picard executable (default: look in $PATH)')

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mmyers1 commented May 9, 2022

Fixed in commit 0ecb0713d0824fce4266a2eb1c2d10f056d87881 on abin branch

@mmyers1 mmyers1 closed this as completed May 9, 2022
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