svsuresh / salmon_deseq2_snakemake Public

This repository has snakemake scripts for salmon-deseq2 pipeline for RNAseq data analysis

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Name		Name	Last commit message	Last commit date
Latest commit History 2 Commits
README.md		README.md
Snakefile		Snakefile
config.yaml		config.yaml
cutadapt.smk		cutadapt.smk
deseq.smk		deseq.smk
fastqc.smk		fastqc.smk
fastqc_after.smk		fastqc_after.smk
index.smk		index.smk
salmon_deseq2 workflow.Rmd		salmon_deseq2 workflow.Rmd
salmon_deseq2.R		salmon_deseq2.R
salmon_quant.smk		salmon_quant.smk