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Hi all, I have some pseudo counts data, which containing value like 0.5, and if I run sc.pp.filter_cells based on this dataset, the filtered number of cells is very low. I wonder if the codes of sc.pp.filter_cells are updated or not, and how to handle such pseudo counts scRNA-seq data based on scanpy. Thanks a lot.
Hi all, I have some pseudo counts data, which containing value like 0.5, and if I run sc.pp.filter_cells based on this dataset, the filtered number of cells is very low. I wonder if the codes of sc.pp.filter_cells are updated or not, and how to handle such pseudo counts scRNA-seq data based on scanpy. Thanks a lot.
The dataset I used is https://portal.hubmapconsortium.org/browse/dataset/fd57a928d9f3cee7e95d284f1d5b9935
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