You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I have checked that this issue has not already been reported.
I have confirmed this bug exists on the latest version of scanpy.
(optional) I have confirmed this bug exists on the master branch of scanpy.
The documentation of sc.tl.tsne and sc.external.tl.phate weren't updated to indicate that X_{tsne,phate} are obs*m* fields
The documentation of both sc.tl.tsne and sc.tl.umap don't indicate the addition of the uns dictionary with the details of the embedding parameters
The uns dictionaries returned by sc.tl.tsne and sc.tl.umap don't seem to follow the same logic: tsne's param dictionary holds most of the adjustable parameters (even irrelevant ones like n_jobs), while the umap dictionary holds only a and b parameters.
The text was updated successfully, but these errors were encountered:
sc.tl.tsne
andsc.external.tl.phate
weren't updated to indicate thatX_{tsne,phate}
areobs*m*
fieldssc.tl.tsne
andsc.tl.umap
don't indicate the addition of theuns
dictionary with the details of the embedding parametersuns
dictionaries returned bysc.tl.tsne
andsc.tl.umap
don't seem to follow the same logic: tsne's param dictionary holds most of the adjustable parameters (even irrelevant ones liken_jobs
), while the umap dictionary holds only a and b parameters.The text was updated successfully, but these errors were encountered: