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I have always had a question: do I need to scale my adata before running sc.tl.score_genes? #3080

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christophechu opened this issue May 30, 2024 · 1 comment
Closed
3 tasks done

I have always had a question: do I need to scale my adata before running sc.tl.score_genes? #3080

christophechu opened this issue May 30, 2024 · 1 comment
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@christophechu
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Please make sure these conditions are met

  • I have checked that this issue has not already been reported.
  • I have confirmed this bug exists on the latest version of scanpy.
  • (optional) I have confirmed this bug exists on the main branch of scanpy.

What happened?

I have always had a question: do I need to scale my adata before running sc.tl.score_genes?

Minimal code sample

sc.tl.score_genes_cell_cycle(adata_hvg, layers='scaled', s_genes=s_genes, g2m_genes=g2m_genes)

Error output

No response

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@christophechu christophechu added Bug 🐛 Triage 🩺 This issue needs to be triaged by a maintainer labels May 30, 2024
@flying-sheep flying-sheep added Question and removed Bug 🐛 Triage 🩺 This issue needs to be triaged by a maintainer labels Jun 7, 2024
@flying-sheep
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Hi, this issue tracker is better suited for bugs or enhancement request. Please ask e.g. here: https://discourse.scverse.org/

@flying-sheep flying-sheep closed this as not planned Won't fix, can't repro, duplicate, stale Jun 7, 2024
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@flying-sheep @christophechu