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dpt_timeseries with adata.n_var > 50 #31

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zacharylau10 opened this issue Aug 16, 2017 · 2 comments
Closed

dpt_timeseries with adata.n_var > 50 #31

zacharylau10 opened this issue Aug 16, 2017 · 2 comments

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@zacharylau10
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Hi,
when I use dpt_timeseries function with adata.n_var > 50, there is no output or any hint and just empty.
I saw the source code and there is a comment # only if number of genes is not too high
Does it mean this function could not deal with n_var > 50?
I think there would be a hint when n_var > 50, if not it will confuse others. Thank you~
@falexwolf
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Hi Zachary,
thank you for your remark. Yes, I agree, there should be a hint that tells the user to provide a set of selected genes; I've done this many times already but it didn't end up in the function definition. I'll add a hint and a possibility to select a subset of genes very soon.
Cheers,
Alex

@falexwolf
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In the new version (0.2.7), this is resolved.

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@falexwolf @zacharylau10