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Issues: scverse/scanpy

Rename master -> main
#2869 by ivirshup was closed Feb 23, 2024
Closed 4
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Issues list

sc.tl.ingest: pkg_version does not work with anndata==0.10.6 Bug 🐛 Installation Needs info❔ More information needed
#2978 by maarten-devries was closed Apr 8, 2024 updated Apr 8, 2024
3 tasks done
12
scale for sparse matrixes and mask Area – Performance 🐌 Enhancement ✨
#2941 by Intron7 was closed Apr 8, 2024 updated Apr 8, 2024 1.10.1
1
@Intron7
Adding uns to a view fails if there is only one variable
#323 by csweaver was closed Oct 26, 2018 updated Apr 7, 2024
2
End to end workflows on GPU Enhancement ✨
#1177 by cjnolet was closed Apr 5, 2024 updated Apr 5, 2024
1 of 5 tasks
9
Enable GPU accelerated CI Jobs Enhancement ✨
#1793 by Zethson was closed Apr 5, 2024 updated Apr 5, 2024
6 tasks
@Zethson
11
AssertionError: Don’t call _normalize_index with non-categorical/string names Bug 🐛
#2979 by alexlenail was closed Apr 4, 2024 updated Apr 4, 2024
2 of 3 tasks
1
Plotting order in embedding plots with groups parameter
#891 by gokceneraslan was closed Oct 29, 2019 updated Apr 4, 2024
@fidelram
10
plots in Rstudio messed up Area - Plotting 🌺 Bug 🐛 Upstream
#2955 by Sirin24 was closed Apr 3, 2024 updated Apr 3, 2024
2 of 3 tasks
3
Insufficient explanation in docs about n_genes_by_counts variable Area - Documentation 📒 good first issue easy first issue to get started in OSS community contribution!
#1434 by havardtl was closed Feb 24, 2021 updated Apr 1, 2024
2 of 3 tasks
1
4
Gene Names/Identities are showing up as numbers when plotted with highest_expr_genes()
#914 by ArcusGears was closed Nov 13, 2019 updated Mar 29, 2024
13
Dependency on legacy-api-wrap prevents 1.10 conda release Bug 🐛 Installation
#2966 by ivirshup was closed Mar 27, 2024 updated Mar 27, 2024 1.10.1
1
sc.get.aggregate looses values Bug 🐛
#2964 by grst was closed Mar 27, 2024 updated Mar 27, 2024
2 of 3 tasks
1.10.1
1
4
Go back to tutorial submodule Area - Documentation 📒 Development Process 🚀
#2636 by ivirshup was closed Mar 26, 2024 updated Mar 26, 2024 1.10.0
1
@ivirshup
4
Linkage 'Z' contains negative distances. Bug 🐛
#2804 by Biometeor was closed Mar 25, 2024 updated Mar 25, 2024
2 of 3 tasks
1
5
FutureWarning for the 1.11 to begin the process of switching leiden backend Area – API API design
#2935 by ilan-gold was closed Mar 25, 2024 updated Mar 25, 2024 1.10.0
1
@ivirshup
1
missing scanpy components Bug 🐛
#2949 by zjgt was closed Mar 25, 2024 updated Mar 25, 2024
2 of 3 tasks
2
Return type of aggregate is inconsistent Area – API API design Bug 🐛
#2930 by ivirshup was closed Mar 25, 2024 updated Mar 25, 2024 1.10.0
1
5
very slow when I run sc.tl.draw_graph Area – External Dealing with external tools
#1242 by icml-compbio was closed Oct 16, 2023 updated Mar 23, 2024
5
aggregate throws error when aggregating obsm or varm Bug 🐛
#2929 by ivirshup was closed Mar 22, 2024 updated Mar 22, 2024
3 tasks done
1.10.0
1
Highly variable genes for sparse dataset in backed mode Bug 🐛
#2764 by siberianisaev was closed Mar 22, 2024 updated Mar 22, 2024
3 tasks done
1
1
NMF Enhancement ✨
#2938 by ivirshup was closed Mar 21, 2024 updated Mar 22, 2024
Docs for aggregate are incorrect Area - Documentation 📒 Bug 🐛
#2931 by ivirshup was closed Mar 19, 2024 updated Mar 19, 2024
1
Leiden and louvain params not saved to matching key_added key in uns dictionary Bug 🐛
#2887 by theJasonFan was closed Mar 18, 2024 updated Mar 18, 2024
3 tasks done
1
scale max value only cuts high values Bug 🐛
#2912 by Intron7 was closed Mar 14, 2024 updated Mar 14, 2024
3 tasks done
1
Dask update causing CI failures Bug 🐛 Upstream
#2902 by ivirshup was closed Mar 14, 2024 updated Mar 14, 2024
1
1
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