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Can't use More information needed
sc.pl.spatial - TypeError: can't multiply sequence by non-int of type 'float
Bug 🐛
Needs info❔
#2778
by Rafael-Silva-Oliveira
was closed Dec 8, 2023
2 of 3 tasks
Is there a
Jitter parameter in scanpy.pl.umap to reduce overlap?
Area - Plotting 🌺
Enhancement ✨
#2768
by danli349
was closed Feb 27, 2024
Highly variable genes for sparse dataset in backed mode
Bug 🐛
#2764
by siberianisaev
was closed Mar 22, 2024
3 tasks done
Broken search results on the website
Area - Documentation 📒
Bug 🐛
#2763
by VladimirShitov
was closed Jan 25, 2024
3 tasks done
Add lints and import sorting
Development Process 🚀
Enhancement ✨
#2762
by flying-sheep
was closed Nov 23, 2023
The function of "sc.pp.filter" report an error "index out of range", why?
Bug 🐛
#2759
by Silencewu1
was closed Nov 20, 2023
2 of 3 tasks
[scanpy_v1.9.6] pp.calculate_qc_metrics(anndata.h5ad) occured Data type conflic
Bug 🐛
#2758
by OOAAHH
was closed Nov 17, 2023
2 of 3 tasks
Seaborn throws a FutureWarning when using sc.pl.highest_expr_genes
Bug 🐛
Upstream
#2755
by LinearParadox
was closed Nov 16, 2023
2 of 3 tasks
sc.pp.filter_genes runs out of memory
Needs info❔
More information needed
Question
#2754
by huangdanqi
was closed Nov 16, 2023
2 of 3 tasks
Setting adata.raw does not copy data
Area - Raw 🍣
Question
#2748
by yuxiaokang-source
was closed Nov 13, 2023
2 of 3 tasks
The compatibility with SpaceRanger v2.0 or later of
read_visium function
Bug 🐛
#2746
by senbaikang
was closed Nov 10, 2023
3 tasks done
Documentation return fields are heterogeneous
Area - Documentation 📒
#2741
by eroell
was closed Nov 17, 2023
Plot fails after reloading adata when providing RGBA colors in .uns
Area - Plotting 🌺
Bug 🐛
#2730
by LouisK92
was closed Nov 7, 2023
2 of 3 tasks
reset sc.pl.DotPlot defaults
Enhancement ✨
Needs info❔
More information needed
#2708
by c-westhoven
was closed Nov 9, 2023
Metrics started returning inconsistent results
Area – Reproducibility
Exact replication
Bug 🐛
Development Process 🚀
#2688
by flying-sheep
was closed Jan 26, 2024
3 tasks done
Error running https://www.sc-best-practices.org/preprocessing_visualization/quality_control.html#
Bug 🐛
#2685
by malonzm1
was closed Oct 16, 2023
3 tasks done
PCA color fails when return_fig = True and annotate_var_explained = True
Bug 🐛
#2681
by jeskowagner
was closed Oct 16, 2023
3 tasks done
Plotting with using scanpy.pl gives attribute error.
Bug 🐛
#2680
by Kiliankleemann
was closed Nov 13, 2023
2 of 3 tasks
Scanpy in Jupyter notebook: 'Kernel appears to have died'
Bug 🐛
Needs info❔
More information needed
#2675
by jsteward2930
was closed Nov 8, 2023
2 of 3 tasks
Scanpy Shouldn't Append Writekey by Defualt
Enhancement ✨
#2674
by jwalewski
was closed Oct 31, 2023
An error when running scanpy.pl.clustermap()
Bug 🐛
#2673
by GuanKX99
was closed Sep 27, 2023
2 of 3 tasks
highly_variable_genes changing my data
Bug 🐛
#2668
by SabrinaRichter
was closed Oct 19, 2023
3 tasks
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