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Issues list

1:1 alignment for thousands of sequence pairs, not pairwise.
#813 opened Feb 14, 2024 by Paupiera updated Feb 15, 2024
7
mmseq search: swapresults died
#814 opened Feb 14, 2024 by tjmier updated Feb 14, 2024
createdb dies when setting up GTDB taxonomy database
#809 opened Jan 29, 2024 by rikander updated Jan 31, 2024
1
Error: Prefilter died
#774 opened Nov 7, 2023 by art-egorov updated Jan 30, 2024
3
Database creation for GTDB not working (Error: createdb died)
#758 opened Sep 27, 2023 by g0ddengr updated Jan 27, 2024
2
Details of mmseqs filterresult
#807 opened Jan 24, 2024 by RobinEllison updated Jan 24, 2024
easy-taxonomy error when using GTDB
#806 opened Jan 22, 2024 by AstrobioMike updated Jan 22, 2024
libatomic.so.1 not found
#795 opened Jan 7, 2024 by BinhongLiu updated Jan 22, 2024
1
Can MMseqs2 filter easy-search results by (# bases matched/ query length)
#800 opened Jan 14, 2024 by nettanetta updated Jan 14, 2024
Prefilter died when searching
#799 opened Jan 13, 2024 by pipparichter updated Jan 13, 2024
Result from result2msa and convertalis are mismatch
#797 opened Jan 10, 2024 by jiaow1018 updated Jan 10, 2024
mmseqs taxonomy Error: orf filter prefilter died / Error: Search died
#556 opened Apr 19, 2022 by jameslz updated Jan 9, 2024
1
[Question] What are the requirements for adding taxonomy information to a MMSEQS2 database?
#779 opened Nov 16, 2023 by jolespin updated Jan 8, 2024
18
translated search is very fragmented
#796 opened Jan 7, 2024 by nettanetta updated Jan 7, 2024
BLAST tab format does not report gap openings (potentially wrong bit score)
#792 opened Dec 23, 2023 by sarahet updated Jan 2, 2024
4
The result of an easy-search changes the record IDs when they include pipes ("|")
#793 opened Dec 28, 2023 by naamawagner updated Dec 28, 2023
4
process stuck at rescorediagonal when do cluster
#602 opened Sep 6, 2022 by Wangchentong updated Dec 26, 2023
7
can mmseqs databases use mirror site for downloading uniref DBs ?
#791 opened Dec 21, 2023 by Guillaume-Marseille updated Dec 21, 2023
Clustering stuck after merging splits with message about main memory
#702 opened May 8, 2023 by cef61 updated Dec 18, 2023
1
MMseqs2 taxonomy
#789 opened Dec 14, 2023 by kemars updated Dec 14, 2023
Easy-linclust runs for more than 24 hours on genome nucleotide sequences
#726 opened Jun 30, 2023 by kevfly16 updated Dec 14, 2023
2
Question: efficient implementation of mmseqs easy-rbh for large datasets
#777 opened Nov 13, 2023 by shimooper updated Dec 13, 2023
5
[Question] Is there any way to have at least one search result for each nucleotide sequence?
#788 opened Dec 6, 2023 by hwy7 updated Dec 11, 2023
2
LCA fails with segmentation fault
#703 opened May 9, 2023 by itsmisterbrown updated Dec 8, 2023
2
fix bad memory allocation with initX
#787 opened Dec 6, 2023 by gamcil Loading… updated Dec 6, 2023
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