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I'm trying to get mmseqs to output a full global multiple sequence alignment. So far, when I use the cluster mode, it gives me the MSA, but with parts with edges sequence gaps (normally in the N- and C-terminals trimmed off). Is there a way to get all the sequences aligned as the output just like a normal MSA? I want to get a MSA from mmseqs not and export the sequences and run an external MSA program (like ClustalOmega) to do it.
Thanks!
The text was updated successfully, but these errors were encountered:
I'm trying to get mmseqs to output a full global multiple sequence alignment. So far, when I use the cluster mode, it gives me the MSA, but with parts with edges sequence gaps (normally in the N- and C-terminals trimmed off). Is there a way to get all the sequences aligned as the output just like a normal MSA? I want to get a MSA from mmseqs not and export the sequences and run an external MSA program (like ClustalOmega) to do it.
Thanks!
The text was updated successfully, but these errors were encountered: