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Output single machine readable file with the whole report #60

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andersgs opened this issue May 2, 2016 · 1 comment
Open

Output single machine readable file with the whole report #60

andersgs opened this issue May 2, 2016 · 1 comment
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@tseemann
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enhancement

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@andersgs
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andersgs commented May 2, 2016

For instance:

MLST_REPORT_START
...
MLST_REPORT_END
ALN_START
...
ALN_END

etc...

Or, in JSON format.

This will make it easier to parse the report into a LIMs system or into R.
@tseemann tseemann self-assigned this Jul 9, 2017
@tseemann
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tseemann commented Jul 9, 2017

How would you want the JSON arranged?

sample:
   assay1: 
   assay2:

or

assay:
   sample1: 
   sample2:

etc

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@tseemann @andersgs