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286 Open 890 Closed
286 Open 890 Closed
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Issues list

Add edge ids to the SVG representation of a tree enhancement New feature or request Python API Issue is about the Python API Visualisation This issue addresses visualisation
#557 opened Apr 25, 2020 by hyanwong
1
[File format] Only write out ragged columns if data_length > 0 C API Issue is about the C API enhancement New feature or request
#538 opened Apr 15, 2020 by jeromekelleher C Upcoming
7
[File format] Make all ragged column pairs optional on load C API Issue is about the C API enhancement New feature or request
#537 opened Apr 15, 2020 by jeromekelleher C Upcoming
1
Add asv benchmarks to track performance enhancement New feature or request Infrastructure and tools Development infrastructure and tools Performance This issue addresses performance, either runtime or memory
#511 opened Apr 5, 2020 by benjeffery
10
allele frequency function enhancement New feature or request Python API Issue is about the Python API statistics
#504 opened Mar 30, 2020 by petrelharp Python upcoming
16
[Dev] Introduce type annotations? enhancement New feature or request Infrastructure and tools Development infrastructure and tools
#472 opened Mar 11, 2020 by jeromekelleher
4
Transparent loading of compressed tree sequences? enhancement New feature or request Python API Issue is about the Python API
#465 opened Mar 4, 2020 by hyanwong
4
add individuals= argument to simplify enhancement New feature or request Python API Issue is about the Python API
#464 opened Feb 20, 2020 by petrelharp Python upcoming
9
Reducing/removing the need for a temporary output edge table during simplification C API Issue is about the C API
#461 opened Feb 7, 2020 by molpopgen
7
VCF INFO output enhancement New feature or request Python API Issue is about the Python API
#434 opened Dec 3, 2019 by jeromekelleher
1
Calculate r LD coefficient C API Issue is about the C API enhancement New feature or request Python API Issue is about the Python API statistics
#405 opened Nov 19, 2019 by standard-aaron
7
Document C API for sample traversal? C API Issue is about the C API documentation Documentation
#394 opened Oct 25, 2019 by molpopgen
6
Efficient way to count number of isolated samples on a tree? enhancement New feature or request Python API Issue is about the Python API
#362 opened Sep 7, 2019 by hyanwong
7
enumerate general properties that statistics should have documentation Documentation Python API Issue is about the Python API statistics
#357 opened Sep 4, 2019 by petrelharp
2
add mask option to stats enhancement New feature or request Python API Issue is about the Python API
#346 opened Aug 27, 2019 by petrelharp
4
Improve error handling for sample_sets and indexes arguments in stats methods enhancement New feature or request Python API Issue is about the Python API
#322 opened Aug 22, 2019 by jeromekelleher
Deal with missing data in stats enhancement New feature or request
#287 opened Aug 6, 2019 by petrelharp Python 0.6
5
Method to 'prune back' a tree sequence enhancement New feature or request
#281 opened Aug 1, 2019 by jeromekelleher
18
compute covariance matrix and PCA enhancement New feature or request statistics
#275 opened Jul 30, 2019 by petrelharp
3
implement mean_descendants as a node statistic enhancement New feature or request statistics
#273 opened Jul 26, 2019 by petrelharp
1
16
Speed up tree_stats_tests Infrastructure and tools Development infrastructure and tools
#264 opened Jul 18, 2019 by jeromekelleher
removing fixed mutations enhancement New feature or request
#260 opened Jul 10, 2019 by petrelharp
25
Change C behaviour to span normalise by default C API Issue is about the C API
#208 opened Jun 11, 2019 by jeromekelleher
1
Add windows option to genealogical_nearest_neighbours enhancement New feature or request
#193 opened May 28, 2019 by jeromekelleher
@jeromekelleher
3
Generating ms-output from tree sequence enhancement New feature or request Python API Issue is about the Python API
#727 opened May 20, 2019 by SBNoor Python upcoming
10
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