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  1. cem-dataset cem-dataset Public

    Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.

    Jupyter Notebook 26 1

  2. empanada-napari empanada-napari Public

    Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari

    Python 17 7

  3. bootstrap2.5d bootstrap2.5d Public

    Code for the paper: Enforcing Prediction Consistency Across Orthogonal Planes Significantly Improves Segmentation of FIB-SEM Image Volumes by 2D Neural Networks.

    Python 1

Repositories

Showing 10 of 10 repositories
  • empanada-napari Public

    Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari

    volume-em/empanada-napari’s past year of commit activity
    Python 17 BSD-3-Clause 7 6 3 Updated Jul 1, 2024
  • BSS-Tracker Public

    This is a project tracking tool that connects biological specimen entries with a project's investigator, biological sample and sample prep notes.

    volume-em/BSS-Tracker’s past year of commit activity
    JavaScript 0 0 0 0 Updated Mar 18, 2024
  • empanada-napari-docs Public

    Documentation for empanada-napari (https://github.com/volume-em/empanada-napari)

    volume-em/empanada-napari-docs’s past year of commit activity
    0 BSD-3-Clause 0 0 0 Updated Mar 15, 2024
  • empanada Public

    Panoptic segmentation algorithms for 2D and 3D electron microscopy images

    volume-em/empanada’s past year of commit activity
    Python 2 GPL-2.0 0 4 2 Updated Feb 25, 2023
  • cem-dataset Public

    Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.

    volume-em/cem-dataset’s past year of commit activity
    Jupyter Notebook 26 BSD-3-Clause 1 0 1 Updated Dec 30, 2022
  • zooniverse-tools Public

    Scripts and notebooks for data wrangling from Zooniverse.

    volume-em/zooniverse-tools’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Dec 13, 2022
  • volume-em.github.io Public

    Projects developed for the volume EM community

    volume-em/volume-em.github.io’s past year of commit activity
    1 0 0 0 Updated Oct 7, 2022
  • scikit-image Public Forked from scikit-image/scikit-image

    Image processing in Python

    volume-em/scikit-image’s past year of commit activity
    Python 0 2,274 0 0 Updated Jun 3, 2022
  • cell-membrane-virus-interaction Public

    Tools for measuring characteristics of virus-cell interactions from isotropic volume EM data.

    volume-em/cell-membrane-virus-interaction’s past year of commit activity
    Python 1 BSD-3-Clause 0 0 0 Updated Oct 21, 2021
  • bootstrap2.5d Public

    Code for the paper: Enforcing Prediction Consistency Across Orthogonal Planes Significantly Improves Segmentation of FIB-SEM Image Volumes by 2D Neural Networks.

    volume-em/bootstrap2.5d’s past year of commit activity
    Python 1 BSD-3-Clause 0 0 0 Updated Nov 24, 2020

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