(Q37351114)

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Improving macromolecular atomic models at moderate resolution by automated iterative model building, statistical density modification and refinement

scientific article published on 27 June 2003

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scholarly article

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Europe PubMed Central

PMC publication ID

19 August 2017

Improving macromolecular atomic models at moderate resolution by automated iterative model building, statistical density modification and refinement (English)

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

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author name string

Thomas C Terwilliger

1

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Europe PubMed Central

PMC publication ID

19 August 2017

publication date

27 June 2003

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

Acta Crystallographica Section D: Biological Crystallography

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

59

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

Pt 7

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

1174-1182

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

Refinement of macromolecular structures by the maximum-likelihood method

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

wARP: improvement and extension of crystallographic phases by weighted averaging of multiple-refined dummy atomic models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Use of non-crystallographic symmetry in protein structure refinement

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Automated refinement of protein models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

The CCP4 suite: programs for protein crystallography

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Automated side-chain model building and sequence assignment by template matching

1 reference

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6 September 2017

Automated main-chain model building by template matching and iterative fragment extension

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Rapid automatic NCS identification using heavy-atom substructures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Statistical density modification with non-crystallographic symmetry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

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Degradation pathway of the phosphonate ciliatine: crystal structure of 2-aminoethylphosphonate transaminase

1 reference

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6 September 2017

PHENIX: building new software for automated crystallographic structure determination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

ARP/wARP's model-building algorithms. I. The main chain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Pattern-recognition methods to identify secondary structure within X-ray crystallographic electron-density maps.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Genome sequence of the hyperthermophilic crenarchaeon Pyrobaculum aerophilum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Map-likelihood phasing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Maximum-likelihood density modification using pattern recognition of structural motifs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

ARP/wARP and molecular replacement

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Pushing the boundaries of molecular replacement with maximum likelihood

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

A new software routine that automates the fitting of protein X-ray crystallographic electron-density maps.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Refined crystal structure of DsRed, a red fluorescent protein from coral, at 2.0-A resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Crystal structure of UDP-N-acetylmuramoyl-L-alanyl-D-glutamate: meso-diaminopimelate ligase from Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Maximum-likelihood density modification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Automated protein model building combined with iterative structure refinement

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Automated MAD and MIR structure solution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Structure of translation initiation factor 5A from Pyrobaculum aerophilum at 1.75 A resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Human ornithine aminotransferase complexed with L-canaline and gabaculine: structural basis for substrate recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Three-dimensional structure of the armadillo repeat region of beta-catenin

1 reference

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6 September 2017

Structure of the gene V protein of bacteriophage f1 determined by multiwavelength x-ray diffraction on the selenomethionyl protein

1 reference

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6 September 2017

The solution structure of the Tyr41-->His mutant of the single-stranded DNA binding protein encoded by gene V of the filamentous bacteriophage M13.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Refined structure of the gene 5 DNA binding protein from bacteriophage fd

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Improved methods for building protein models in electron density maps and the location of errors in these models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Structure at 2.3 Å resolution of the gene 5 product of bacteriophage fd: A DNA unwinding protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

14 September 2017

Engineering soluble proteins for structural genomics.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

2 September 2018

A comparison of two algorithms for electron-density map improvement by introduction of atomicity: skeletonization, and map sorting followed by refinement.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

2 September 2018

Computer skeletonization and automatic electron density map analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/12832760

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Modified Phased Translation Functions and their Application to Molecular-Fragment Location

1 reference

https://pubmed.ncbi.nlm.nih.gov/12832760

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Automatic modeling of protein backbones in electron-density maps via prediction of Calpha coordinates

1 reference

https://pubmed.ncbi.nlm.nih.gov/12832760

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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10.1107/S0907444903009922

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

release_jnvborcwhfcqnpeyghb7thdug4

1 reference

https://api.fatcat.wiki/v0/release/jnvborcwhfcqnpeyghb7thdug4

24 November 2022

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mapped directly with Wikidata item

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

PubMed publication ID

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Europe PubMed Central

PMC publication ID

19 August 2017

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