Structure of a (Cys3His) zinc ribbon, a ubiquitous motif in archaeal and eucaryal transcription (Q27627594)

GOA release 2020-03-11

zinc ion binding

1 reference

GOA release 2020-03-11

author name string

H T Chen

1

0 references

P Legault

2

0 references

J Glushka

3

0 references

J G Omichinski

4

0 references

R A Scott

High-resolution structure of an archaeal zinc ribbon defines a general architectural motif in eukaryotic RNA polymerases

5

0 references

publication date

September 2000

0 references

published in

Protein Science

0 references

volume

9

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issue

9

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page(s)

1743-52

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cites work

1 reference

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Novel zinc finger motif in the basal transcriptional machinery: three-dimensional NMR studies of the nucleic acid binding domain of transcriptional elongation factor TFIIS

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Crystal structure of a TFIIB-TBP-TATA-element ternary complex

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Structure of the carboxy-terminal LIM domain from the cysteine rich protein CRP

20 March 2017

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Crystallographic refinement of rubredoxin at 1 x 2 A degrees resolution

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High-resolution three-dimensional structure of a single zinc finger from a human enhancer binding protein in solution

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High-resolution structure of an HIV zinc fingerlike domain via a new NMR-based distance geometry approach

20 March 2017

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Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

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AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR

20 March 2017

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20 March 2017

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Complete Genome Sequence of the Methanogenic Archaeon, Methanococcus jannaschii

20 March 2017

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How to measure and predict the molar absorption coefficient of a protein

20 March 2017

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NMRPipe: a multidimensional spectral processing system based on UNIX pipes

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A minimal set of RNA polymerase II transcription protein interactions

20 March 2017

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Structure and functional properties of human general transcription factor IIE

20 March 2017

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Solution structure of the C-terminal core domain of human TFIIB: similarity to cyclin A and interaction with TATA-binding protein

20 March 2017

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The general transcription factors of RNA polymerase II

20 March 2017

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Torsion angle dynamics: reduced variable conformational sampling enhances crystallographic structure refinement

20 March 2017

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The anatomy and taxonomy of protein structure

20 March 2017

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20 March 2017

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Determination of three-dimensional structures of proteins and nucleic acids in solution by nuclear magnetic resonance spectroscopy

29 September 2017

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Molecular genetics of the RNA polymerase II general transcriptional machinery

20 March 2017

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Backbone 1H and 15N resonance assignments of the N-terminal SH3 domain of drk in folded and unfolded states using enhanced-sensitivity pulsed field gradient NMR techniques

7 April 2017

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Improved spectral resolution in cosy 1H NMR spectra of proteins via double quantum filtering

7 April 2017

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Architecture of RNA polymerase II and implications for the transcription mechanism

7 April 2017

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The role of human TFIIB in transcription start site selection in vitro and in vivo

29 September 2017

1 reference

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The Cys4 zinc finger of bacteriophage T7 primase in sequence-specific single-stranded DNA recognition.

29 September 2017

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An activation-specific role for transcription factor TFIIB in vivo

29 September 2017

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RNA polymerase II holoenzymes and subcomplexes.

29 September 2017

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Mutational analysis of the D1/E1 core helices and the conserved N-terminal region of yeast transcription factor IIB (TFIIB): identification of an N-terminal mutant that stabilizes TATA-binding protein-TFIIB-DNA complexes

29 September 2017

1 reference

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RNA polymerase II-associated protein (RAP) 74 binds transcription factor (TF) IIB and blocks TFIIB-RAP30 binding

29 September 2017

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Archaeal transcription factors and their role in transcription initiation

29 September 2017

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Functional domains of transcription factor TFIIB.

29 September 2017

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Delineation of two functional regions of transcription factor TFIIB.

29 September 2017

1 reference

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Multiple functional domains of human transcription factor IIB: distinct interactions with two general transcription factors and RNA polymerase II.

29 September 2017

1 reference

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Potential RNA polymerase II-induced interactions of transcription factor TFIIB.

29 September 2017

1 reference

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Hydrogen bonding in globular proteins

29 September 2017

1 reference

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Structural motifs and potential sigma homologies in the large subunit of human general transcription factor TFIIE.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144703

Stimulation of transcript elongation requires both the zinc finger and RNA polymerase II binding domains of human TFIIS.

29 September 2017

1 reference

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Yeast RNA polymerase II initiation factor e: isolation and identification as the functional counterpart of human transcription factor IIB

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144703

NH---S hydrogen bonds in Peptococcus aerogenes ferredoxin, Clostridium pasteurianum rubredoxin, and Chromatium high potential iron protein

29 September 2017

1 reference

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The N-terminal region of yeast TFIIB contains two adjacent functional domains involved in stable RNA polymerase II binding and transcription start site selection

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144703

Hepatitis B virus X protein is a transcriptional modulator that communicates with transcription factor IIB and the RNA polymerase II subunit 5.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144703

Transcription factor TFIIB sites important for interaction with promoter-bound TFIID.

2 June 2018

1 reference

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Zinc mining for protein domains

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144703

The yeast SUA7 gene encodes a homolog of human transcription factor TFIIB and is required for normal start site selection in vivo.

2 June 2018

1 reference

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Overcoming the overlap problem in the assignment of 1H NMR spectra of larger proteins by use of three-dimensional heteronuclear 1H-15N Hartmann-Hahn-multiple quantum coherence and nuclear Overhauser-multiple quantum coherence spectroscopy: applicati

2 June 2018

1 reference

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Torsion-angle molecular dynamics as a new efficient tool for NMR structure calculation.

19 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144703

Functional dissection of TFIIB domains required for TFIIB-TFIID-promoter complex formation and basal transcription activity

27 November 2018

1 reference

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Activator-induced conformational change in general transcription factor TFIIB.

27 November 2018

1 reference

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Structural evidence for a common zinc binding domain in archaeal and eukaryal transcription factor IIB proteins

27 November 2018

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A low-barrier hydrogen bond in subtilisin: 1H and 15N NMR studies with peptidyl trifluoromethyl ketones

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