Bacterial microcompartment organelles: protein shell structure and evolution (Q34101360)

31 July 2017

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title

Bacterial microcompartment organelles: protein shell structure and evolution (English)

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31 July 2017

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Todd O Yeates

1

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author name string

Christopher S Crowley

series ordinal

2

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31 July 2017

Shiho Tanaka

series ordinal

3

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31 July 2017

publication date

1 January 2010

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Annual Review of Biophysics

31 July 2017

published in

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31 July 2017

volume

39

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31 July 2017

page(s)

185-205

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Photosynthesis and photorespiration in a mutant of the cyanobacterium Synechocystis PCC 6803 lacking carboxysomes

31 July 2017

cites work

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Structure and mechanisms of a protein-based organelle in Escherichia coli

5 July 2018

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Two-dimensional crystals of carboxysome shell proteins recapitulate the hexagonal packing of three-dimensional crystals

5 July 2018

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The pentameric vertex proteins are necessary for the icosahedral carboxysome shell to function as a CO2 leakage barrier

5 July 2018

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Analysis of lattice-translocation disorder in the layered hexagonal structure of carboxysome shell protein CsoS1C

5 July 2018

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Structure of a trimeric bacterial microcompartment shell protein, EtuB, associated with ethanol utilization in Clostridium kluyveri

5 July 2018

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Crystal structure of the EutL shell protein of the ethanolamine ammonia lyase microcompartment

5 July 2018

1 reference

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Identification and structural analysis of a novel carboxysome shell protein with implications for metabolite transport

5 July 2018

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Insights from multiple structures of the shell proteins from the β-carboxysome

5 July 2018

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Exploiting genomic patterns to discover new supramolecular protein assemblies

5 July 2018

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Structural basis of enzyme encapsulation into a bacterial nanocompartment

5 July 2018

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Halothiobacillus neapolitanus carboxysomes sequester heterologous and chimeric RubisCO species

5 July 2018

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Bacterial microcompartments: their properties and paradoxes

5 July 2018

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Structure of the PduU shell protein from the Pdu microcompartment of Salmonella

5 July 2018

1 reference

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Protein-based organelles in bacteria: carboxysomes and related microcompartments

5 July 2018

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Microcompartments for B12-dependent 1,2-propanediol degradation provide protection from DNA and cellular damage by a reactive metabolic intermediate

5 July 2018

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Atomic-level models of the bacterial carboxysome shell

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272493

CO2 fixation kinetics of Halothiobacillus neapolitanus mutant carboxysomes lacking carbonic anhydrase suggest the shell acts as a diffusional barrier for CO2.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272493

The genome of Clostridium kluyveri, a strict anaerobe with unique metabolic features.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272493

A multiprotein bicarbonate dehydration complex essential to carboxysome function in cyanobacteria

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272493

Genomic and biochemical studies demonstrating the absence of an alkane-producing phenotype in Vibrio furnissii M1

5 July 2018

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Acclimation to low [CO(2)] by an inorganic carbon-concentrating mechanism in Cyanophora paradoxa.

5 July 2018

1 reference

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Analysis of Carboxysomes from Synechococcus PCC7942 Reveals Multiple Rubisco Complexes with Carboxysomal Proteins CcmM and CcaA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272493

The structure of isolated Synechococcus strain WH8102 carboxysomes as revealed by electron cryotomography

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272493

Functional insights from structural genomics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272493

Structural analysis of CsoS1A and the protein shell of the Halothiobacillus neapolitanus carboxysome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272493

Self-assembly in the carboxysome: a viral capsid-like protein shell in bacterial cells.

5 July 2018

1 reference

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How electron cryotomography is opening a new window onto prokaryotic ultrastructure

5 July 2018

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Electron cryotomography of immature HIV-1 virions reveals the structure of the CA and SP1 Gag shells

5 July 2018

1 reference

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Structure of Halothiobacillus neapolitanus carboxysomes by cryo-electron tomography

5 July 2018

1 reference

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Characterization of the carboxysomal carbonic anhydrase CsoSCA from Halothiobacillus neapolitanus

5 July 2018

1 reference

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Expression of Human Carbonic Anhydrase in the Cyanobacterium Synechococcus PCC7942 Creates a High CO(2)-Requiring Phenotype : Evidence for a Central Role for Carboxysomes in the CO(2) Concentrating Mechanism

5 July 2018

1 reference

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Conserving a volatile metabolite: a role for carboxysome-like organelles in Salmonella enterica

5 July 2018

1 reference

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Polyhedral organelles compartmenting bacterial metabolic processes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272493

Minimal functions and physiological conditions required for growth of salmonella enterica on ethanolamine in the absence of the metabolosome

5 July 2018

1 reference

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Protein Structures Forming the Shell of Primitive Bacterial Organelles

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272493

The N-terminal regions of beta and gamma subunits lower the solubility of adenosylcobalamin-dependent diol dehydratase

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272493

Magnetosome formation in prokaryotes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272493

A novel evolutionary lineage of carbonic anhydrase (epsilon class) is a component of the carboxysome shell

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272493

Cytology of Cyanophycea. II. Centroplasm and granular inclusions of Phormidium uncinatum

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272493

Protein content of polyhedral organelles involved in coenzyme B12-dependent degradation of 1,2-propanediol in Salmonella enterica serovar Typhimurium LT2

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272493

Enzymes with molecular tunnels

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272493

CO2 concentrating mechanisms in cyanobacteria: molecular components, their diversity and evolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272493

PduA is a shell protein of polyhedral organelles involved in coenzyme B(12)-dependent degradation of 1,2-propanediol in Salmonella enterica serovar typhimurium LT2.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272493

Microcompartments in prokaryotes: carboxysomes and related polyhedra

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272493

Identification and localization of the carboxysome peptide Csos3 and its corresponding gene in Thiobacillus neapolitanus

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272493

The propanediol utilization (pdu) operon of Salmonella enterica serovar Typhimurium LT2 includes genes necessary for formation of polyhedral organelles involved in coenzyme B(12)-dependent 1, 2-propanediol degradation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272493

The 17-gene ethanolamine (eut) operon of Salmonella typhimurium encodes five homologues of carboxysome shell proteins.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272493

Detecting protein function and protein-protein interactions from genome sequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272493

Horizontal gene transfer among genomes: the complexity hypothesis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272493

Selfish operons: horizontal transfer may drive the evolution of gene clusters

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272493

Analysis of a genomic DNA region from the cyanobacterium Synechococcus sp. strain PCC7942 involved in carboxysome assembly and function

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272493

The control region of the pdu/cob regulon in Salmonella typhimurium

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272493

A carbonic anhydrase from the archaeon Methanosarcina thermophila

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272493

Isolation and characterization of a carboxysome shell gene from Thiobacillus neapolitanus

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272493

Ethanolamine utilization in Salmonella typhimurium: nucleotide sequence, protein expression, and mutational analysis of the cchA cchB eutE eutJ eutG eutH gene cluster

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272493

Glutathione is required for maximal transcription of the cobalamin biosynthetic and 1,2-propanediol utilization (cob/pdu) regulon and for the catabolism of ethanolamine, 1,2-propanediol, and propionate in Salmonella typhimurium LT2.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272493

Ultrastructure of Blue-Green Algae

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272493

Comparative ultrastructure of the thiobacilli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272493

Functional organelles in prokaryotes: polyhedral inclusions (carboxysomes) of Thiobacillus neapolitanus

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272493

Physics of chemoreception

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272493

Deoxyribonucleic acid in Nitrobacter carboxysomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272493

Transcript analysis of the Halothiobacillus neapolitanus cso operon

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272493

The photosynthetic apparatus of Prochlorococcus: Insights through comparative genomics

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272493

Considerations on the structure and biochemistry of bacterial polyhydroxyalkanoic acid inclusions

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272493

Exploitation of gene context

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20192762

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

[Characterization of a phage-like particle from cells of Nitrobacter. II. Structure and size (author's transl)]

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20192762

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1146/ANNUREV.BIOPHYS.093008.131418

1 reference

31 July 2017

1 reference

31 July 2017

1 reference