Leveraging the mouse genome for gene prediction in human: from whole-genome shotgun reads to a global synteny map. (Q35023157)

5 August 2017

title

Leveraging the mouse genome for gene prediction in human: from whole-genome shotgun reads to a global synteny map. (English)

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5 August 2017

main subject

whole genome sequencing

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1

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5 August 2017

Evan Keibler

2

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5 August 2017

Ping Hu

series ordinal

3

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5 August 2017

Ian Korf

series ordinal

4

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5 August 2017

Michael R Brent

series ordinal

5

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5 August 2017

publication date

1 January 2003

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5 August 2017

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5 August 2017

volume

13

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5 August 2017

issue

1

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5 August 2017

page(s)

46-54

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Comparison of mouse and human genomes followed by experimental verification yields an estimated 1,019 additional genes

5 August 2017

cites work

1 reference

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Comparative gene prediction in human and mouse

8 July 2018

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Initial sequencing and comparative analysis of the mouse genome

8 July 2018

1 reference

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Comparative genomic sequence analysis of the human chromosome 21 Down syndrome critical region

8 July 2018

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8 July 2018

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8 July 2018

1 reference

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Integrating genomic homology into gene structure prediction.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=430948

Computational inference of homologous gene structures in the human genome

8 July 2018

1 reference

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8 July 2018

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Human and mouse gene structure: comparative analysis and application to exon prediction

8 July 2018

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Estimate of human gene number provided by genome-wide analysis using Tetraodon nigroviridis DNA sequence

8 July 2018

1 reference

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Shotgun sample sequence comparisons between mouse and human genomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=430948

PipMaker--a web server for aligning two genomic DNA sequences

8 July 2018

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Using GeneWise in the Drosophila annotation experiment

8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=430948

8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=430948

Comparative sequence of human and mouse BAC clones from the mnd2 region of chromosome 2p13

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=430948

Evolutionary parameters of the transcribed mammalian genome: an analysis of 2,820 orthologous rodent and human sequences

8 July 2018

1 reference

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Prediction of complete gene structures in human genomic DNA

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=430948

Large-scale comparative sequence analysis of the human and murine Bruton's tyrosine kinase loci reveals conserved regulatory domains

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=430948

Comparative analysis of 1196 orthologous mouse and human full-length mRNA and protein sequences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=430948

Analysis of compositionally biased regions in sequence databases

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=430948

Genomic mapping by fingerprinting random clones: a mathematical analysis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=430948

Prediction of gene structure

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=430948

Comparative ab initio prediction of gene structures using pair HMMs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=430948

The conserved exon method for gene finding

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=430948

Comparative sequence analysis of a gene-rich cluster at human chromosome 12p13 and its syntenic region in mouse chromosome 6.

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=430948

Applications of Generalized Pair Hidden Markov Models to Alignment and Gene Finding Problems

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=430948

Striking sequence similarity over almost 100 kilobases of human and mouse T–cell receptor DNA

9 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12529305

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Analysis and Comparison of the Mouse and Human Immunoglobulin Heavy Chain JH–Cμ–Cδ Locus

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12529305

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GR.830003

1 reference

5 August 2017

1 reference

5 August 2017

1 reference