AntiFam: a tool to help identify spurious ORFs in protein annotation (Q35840954)

10 August 2017

AntiFam: a tool to help identify spurious ORFs in protein annotation (English)

1 reference

10 August 2017

6

1 reference

10 August 2017

5

Claire O'Donovan

0 references

Ruth Y. Eberhardt

object named as

Ruth Y Eberhardt

series ordinal

1

0 references

Daniel H Haft

series ordinal

2

object named as

Daniel H Haft

1 reference

10 August 2017

3

Marco Punta

1 reference

10 August 2017

4

Maria Martin

1 reference

10 August 2017

20 March 2012

1 reference

10 August 2017

1 reference

10 August 2017

2012

1 reference

10 August 2017

bas003

1 reference

The Pfam protein families database

10 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3308159

Misannotations of rRNA can now generate 90% false positive protein matches in metatranscriptomic studies.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3308159

UniProt Knowledgebase: a hub of integrated protein data

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3308159

A new generation of homology search tools based on probabilistic inference

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3308159

Annotation error in public databases: misannotation of molecular function in enzyme superfamilies

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3308159

The Pfam protein families database

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3308159

A combined transmembrane topology and signal peptide prediction method

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3308159

Go hunting in sequence databases but watch out for the traps

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3308159

Analysis of compositionally biased regions in sequence databases

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3308159

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3308159

Bacterial peptide chain release factors: conserved primary structure and possible frameshift regulation of release factor 2.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3308159

Identifying bacterial genes and endosymbiont DNA with Glimmer

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3308159

Large-scale, multi-genome analysis of alternate open reading frames in bacteria and archaea.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3308159

Errors in genome annotation

24 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22434837

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/DATABASE/BAS003

1 reference

10 August 2017

1 reference

PMC publication ID

3308159

10 August 2017

PubMed publication ID

22434837

1 reference

PMC publication ID

3308159