Structure of a Holliday junction complex reveals mechanisms governing a highly regulated DNA transaction (Q36936045)

17 August 2017

Structure of a Holliday junction complex reveals mechanisms governing a highly regulated DNA transaction (English)

1 reference

17 August 2017

3

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7 June 2020

Wenjun Tong

7

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7 June 2020

Nikolaus Grigorieff

8

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7 June 2020

Gregory D Van Duyne

10

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7 June 2020

author name string

Gurunathan Laxmikanthan

1

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7 June 2020

Chen Xu

2

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7 June 2020

David Warren

4

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7 June 2020

Lindsay Steele

5

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7 June 2020

Nicole Seah

6

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7 June 2020

Arthur Landy

9

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7 June 2020

language of work or name

English

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publication date

25 May 2016

1 reference

17 August 2017

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7 June 2020

volume

5

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An Overview of Tyrosine Site-specific Recombination: From an Flp Perspective

7 June 2020

cites work

1 reference

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The λ Integrase Site-specific Recombination Pathway

29 September 2017

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29 September 2017

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A primer to single-particle cryo-electron microscopy

29 September 2017

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Mapping the λ Integrase bridges in the nucleoprotein Holliday junction intermediates of viral integrative and excisive recombination.

29 September 2017

1 reference

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Nucleoprotein architectures regulating the directionality of viral integration and excision

29 September 2017

1 reference

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Likelihood-based classification of cryo-EM images using FREALIGN

29 September 2017

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Electron counting and beam-induced motion correction enable near-atomic-resolution single-particle cryo-EM.

29 September 2017

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Iterative stable alignment and clustering of 2D transmission electron microscope images

29 September 2017

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Stoichiometric incorporation of base substitutions at specific sites in supercoiled DNA and supercoiled recombination intermediates

29 September 2017

1 reference

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The shape of the DNA minor groove directs binding by the DNA-bending protein Fis

29 September 2017

1 reference

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Super-resolution biomolecular crystallography with low-resolution data

29 September 2017

1 reference

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NMR Structure of the Amino-Terminal Domain of the Lambda Integrase Protein in Complex with DNA: Immobilization of a Flexible Tail Facilitates Beta-Sheet Recognition of the Major Groove

29 September 2017

1 reference

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A chimeric Cre recombinase with regulated directionality

29 September 2017

1 reference

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Combining efficient conformational sampling with a deformable elastic network model facilitates structure refinement at low resolution

29 September 2017

1 reference

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Version 1.2 of the Crystallography and NMR system

29 September 2017

1 reference

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Structure of the cooperative Xis-DNA complex reveals a micronucleoprotein filament that regulates phage lambda intasome assembly

29 September 2017

1 reference

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Fis Targets Assembly of the Xis Nucleoprotein Filament to Promote Excisive Recombination by Phage Lambda

29 September 2017

1 reference

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SPARX, a new environment for Cryo-EM image processing

29 September 2017

1 reference

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EMAN2: an extensible image processing suite for electron microscopy

29 September 2017

1 reference

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Automated electron microscope tomography using robust prediction of specimen movements

29 September 2017

1 reference

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A structural basis for allosteric control of DNA recombination by lambda integrase.

29 September 2017

1 reference

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UCSF Chimera--a visualization system for exploratory research and analysis

29 September 2017

1 reference

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Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy

29 September 2017

2 references

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29 September 2017

12 December 2020

A conformational switch controls the DNA cleavage activity of lambda integrase

1 reference

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Accurate determination of local defocus and specimen tilt in electron microscopy

29 September 2017

1 reference

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The Escherichia coli Fis Protein Stimulates Bacteriophage λ Integrative Recombination In Vitro

29 September 2017

1 reference

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Differential affinity and cooperativity functions of the amino-terminal 70 residues of lambda integrase

29 September 2017

1 reference

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Integration sites for genetic elements in prokaryotic tRNA and tmRNA genes: sublocation preference of integrase subfamilies

29 September 2017

1 reference

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A structural view of cre-loxp site-specific recombination

29 September 2017

1 reference

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Structure of the Holliday junction intermediate in Cre-loxP site-specific recombination.

29 September 2017

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Structure of Cre recombinase complexed with DNA in a site-specific recombination synapse

29 September 2017

1 reference

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Crystal structure of an IHF-DNA complex: a protein-induced DNA U-turn

29 September 2017

1 reference

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Positions of strand exchange in mycobacteriophage L5 integration and characterization of the attB site

29 September 2017

1 reference

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Bacteriophage lambda int protein recognizes two classes of sequence in the phage att site: characterization of arm-type sites

29 September 2017

1 reference

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An intermediate in the phage lambda site-specific recombination reaction is revealed by phosphorothioate substitution in DNA.

29 September 2017

1 reference

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A comparison of the effects of single-base and triple-base changes in the integrase arm-type binding sites on the site-specific recombination of bacteriophage lambda

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4880445

Multiple effects of Fis on integration and the control of lysogeny in phage lambda

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4880445

Efficient excision of phage lambda from the Escherichia coli chromosome requires the Fis protein

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4880445

Characterization of the bacteriophage lambda excisionase (Xis) protein: the C-terminus is required for Xis-integrase cooperativity but not for DNA binding

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4880445

Integrative recombination of bacteriophage lambda DNA in vitro

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4880445

The bacteriophage lambda int gene product. A filter assay for genetic recombination, purification of int, and specific binding to DNA

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4880445

Quantifying the local resolution of cryo-EM density maps

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4880445

High-resolution noise substitution to measure overfitting and validate resolution in 3D structure determination by single particle electron cryomicroscopy

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4880445

The topological mechanism of phage lambda integrase

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4880445

Swapping DNA strands and sensing homology without branch migration in lambda site-specific recombination

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4880445

E. coli integration host factor binds to specific sites in DNA

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4880445

Resolution of synthetic att-site Holliday structures by the integrase protein of bacteriophage λ

27 June 2018

1 reference

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Purification of Bacteriophage λ, Int Protein

27 June 2018

1 reference

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Bacteriophage lambda site-specific recombination proceeds with a defined order of strand exchanges

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4880445

Synapsis of attachment sites during lambda integrative recombination involves capture of a naked DNA by a protein-DNA complex

27 June 2018

1 reference

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Cellular factors couple recombination with growth phase: characterization of a new component in the lambda site-specific recombination pathway.

27 June 2018

1 reference

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Control of directionality in lambda site specific recombination

27 June 2018

1 reference

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DNA looping generated by DNA bending protein IHF and the two domains of lambda integrase

27 June 2018

1 reference

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Crystal structure of the excisionase-DNA complex from bacteriophage lambda

27 June 2018

1 reference

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Purification and characterization of the integrase from the Haemophilus influenzae bacteriophage HP1; identification of a four-stranded intermediate and the order of strand exchange.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4880445

Position and direction of strand exchange in bacteriophage HK022 integration

4 September 2018

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12 December 2020

Site-specific recombination intermediates trapped with suicide substrates

1 reference

12 December 2020

Protein-protein interactions in a higher-order structure direct lambda site-specific recombination

1 reference

12 December 2020

Half-att site substrates reveal the homology independence and minimal protein requirements for productive synapsis in lambda excisive recombination

1 reference

12 December 2020

Identifiers

DOI

10.7554/ELIFE.14313

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27223329%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27223329%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

PubMed publication ID

27223329

1 reference