Improving macromolecular atomic models at moderate resolution by automated iterative model building, statistical density modification and refinement (Q37351114)

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scientific article published on 27 June 2003

Language	Label	Description	Also known as
English	Improving macromolecular atomic models at moderate resolution by automated iterative model building, statistical density modification and refinement	scientific article published on 27 June 2003

Statements

scholarly article

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

Improving macromolecular atomic models at moderate resolution by automated iterative model building, statistical density modification and refinement (English)

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

0 references

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1 reference

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inferred from title

author name string

Thomas C Terwilliger

1

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

publication date

27 June 2003

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

Acta Crystallographica Section D: Biological Crystallography

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

59

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

Pt 7

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

1174-1182

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

Refinement of macromolecular structures by the maximum-likelihood method

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

wARP: improvement and extension of crystallographic phases by weighted averaging of multiple-refined dummy atomic models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Use of non-crystallographic symmetry in protein structure refinement

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Automated refinement of protein models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

The CCP4 suite: programs for protein crystallography

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Automated side-chain model building and sequence assignment by template matching

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Automated main-chain model building by template matching and iterative fragment extension

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Rapid automatic NCS identification using heavy-atom substructures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Statistical density modification with non-crystallographic symmetry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Degradation pathway of the phosphonate ciliatine: crystal structure of 2-aminoethylphosphonate transaminase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

PHENIX: building new software for automated crystallographic structure determination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

ARP/wARP's model-building algorithms. I. The main chain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Pattern-recognition methods to identify secondary structure within X-ray crystallographic electron-density maps.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Genome sequence of the hyperthermophilic crenarchaeon Pyrobaculum aerophilum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Map-likelihood phasing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Maximum-likelihood density modification using pattern recognition of structural motifs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

ARP/wARP and molecular replacement

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Pushing the boundaries of molecular replacement with maximum likelihood

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

A new software routine that automates the fitting of protein X-ray crystallographic electron-density maps.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Refined crystal structure of DsRed, a red fluorescent protein from coral, at 2.0-A resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Crystal structure of UDP-N-acetylmuramoyl-L-alanyl-D-glutamate: meso-diaminopimelate ligase from Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Maximum-likelihood density modification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Automated protein model building combined with iterative structure refinement

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Automated MAD and MIR structure solution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Structure of translation initiation factor 5A from Pyrobaculum aerophilum at 1.75 A resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Human ornithine aminotransferase complexed with L-canaline and gabaculine: structural basis for substrate recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Three-dimensional structure of the armadillo repeat region of beta-catenin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Structure of the gene V protein of bacteriophage f1 determined by multiwavelength x-ray diffraction on the selenomethionyl protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

The solution structure of the Tyr41-->His mutant of the single-stranded DNA binding protein encoded by gene V of the filamentous bacteriophage M13.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Refined structure of the gene 5 DNA binding protein from bacteriophage fd

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Improved methods for building protein models in electron density maps and the location of errors in these models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

6 September 2017

Structure at 2.3 Å resolution of the gene 5 product of bacteriophage fd: A DNA unwinding protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

14 September 2017

Engineering soluble proteins for structural genomics.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

2 September 2018

A comparison of two algorithms for electron-density map improvement by introduction of atomicity: skeletonization, and map sorting followed by refinement.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745880

2 September 2018

Computer skeletonization and automatic electron density map analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/12832760

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Modified Phased Translation Functions and their Application to Molecular-Fragment Location

1 reference

https://pubmed.ncbi.nlm.nih.gov/12832760

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Automatic modeling of protein backbones in electron-density maps via prediction of Calpha coordinates

1 reference

https://pubmed.ncbi.nlm.nih.gov/12832760

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1107/S0907444903009922

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

release_jnvborcwhfcqnpeyghb7thdug4

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https://api.fatcat.wiki/v0/release/jnvborcwhfcqnpeyghb7thdug4

24 November 2022

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mapped directly with Wikidata item

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

PubMed publication ID

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Europe PubMed Central

PMC publication ID

19 August 2017

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