Dose-dependent reduction of replication elongation rate by (p)ppGpp in Escherichia coli and Bacillus subtilis (Q40272221)

19 September 2017

Dose-dependent reduction of replication elongation rate by (p)ppGpp in Escherichia coli and Bacillus subtilis (English)

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19 September 2017

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3

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19 September 2017

Jessica Denapoli

1

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19 September 2017

Ashley K Tehranchi

series ordinal

2

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19 September 2017

language of work or name

English

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publication date

6 March 2013

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19 September 2017

Molecular Microbiology

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19 September 2017

88

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19 September 2017

1

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19 September 2017

93-104

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describes a project that uses

19 September 2017

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3640871/fullTextXML

inferred from PubMed Central ID database lookup

cites work

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Binding Mechanism of Metal⋅NTP Substrates and Stringent-Response Alarmones to Bacterial DnaG-Type Primases

22 September 2017

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22 September 2017

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22 September 2017

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The stringent response and cell cycle arrest in Escherichia coli

22 September 2017

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22 September 2017

(p)ppGpp: still magical?

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Transcription profiling of the stringent response in Escherichia coli

22 September 2017

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Regulation of the initiation of chromosomal replication in bacteria

22 September 2017

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Nutritional control of elongation of DNA replication by (p)ppGpp

22 September 2017

1 reference

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Replisome mechanics: insights into a twin DNA polymerase machine

22 September 2017

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Acyl carrier protein/SpoT interaction, the switch linking SpoT-dependent stress response to fatty acid metabolism

22 September 2017

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Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

22 September 2017

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Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

22 September 2017

1 reference

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DNA primase acts as a molecular brake in DNA replication

22 September 2017

1 reference

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Iron limitation induces SpoT-dependent accumulation of ppGpp in Escherichia coli

22 September 2017

1 reference

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Independence of replisomes in Escherichia coli chromosomal replication

22 September 2017

1 reference

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Hyperinitiation of DNA replication in Escherichia coli leads to replication fork collapse and inviability

22 September 2017

1 reference

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Chromosomal replicases as asymmetric dimers: studies of subunit arrangement and functional consequences

22 September 2017

1 reference

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Feedback controls restrain the initiation of Escherichia coli chromosomal replication.

22 September 2017

1 reference

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Mechanism of regulation of transcription initiation by ppGpp. I. Effects of ppGpp on transcription initiation in vivo and in vitro

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640871

Analysis of topoisomerase function in bacterial replication fork movement: use of DNA microarrays

22 September 2017

1 reference

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The complete genome sequence of Escherichia coli K-12

22 September 2017

1 reference

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Guanosine pentaphosphate phosphohydrolase of Escherichia coli is a long-chain exopolyphosphatase

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640871

Guanosine 3',5'-bispyrophosphate (ppGpp) synthesis in cells of Escherichia coli starved for Pi

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640871

Enzyme changes during Bacillus subtilis sporulation caused by deprivation of guanine nucleotides

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640871

Inititation and termination of chromosome replication in Escherichia coli subjected to amino acid starvation

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640871

Response of Guanosine 5′-Triphosphate Concentration to Nutritional Changes and Its Significance for Bacillus subtilis Sporulation

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640871

Influence of Starvation for Methionine and Other Amino Acids on Subsequent Bacterial Deoxyribonucleic Acid Replication

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640871

Catabolic repression of bacterial sporulation

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640871

Relationship between Cell Size and Time of Initiation of DNA Replication

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640871

Effect of Serine Hydroxamate on Phospholipid Synthesis in Escherichia coli

22 September 2017

1 reference

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Ribosomes as sensors of heat and cold shock in Escherichia coli

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640871

Coupling of DNA replication to growth rate in Escherichia coli: a possible role for guanosine tetraphosphate

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640871

Simple downshift and resulting lack of correlation between ppGpp pool size and ribonucleic acid accumulation

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640871

Mutants of Escherichia coli defective in the degradation of guanosine 5′-triphosphate, 3′-diphosphate (pppGpp)

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640871

Tracking of controlled Escherichia coli replication fork stalling and restart at repressor-bound DNA in vivo.

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640871

On the regulation of guanosine tetraphosphate levels in stringent and relaxed strains of Escherichia coli

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640871

Effect of relA function on the replication of plasmid pBR322 in Escherichia coli.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640871

Overexpression of the relA gene in Escherichia coli.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640871

Coordinated leading- and lagging-strand synthesis at the Escherichia coli DNA replication fork. II. Frequency of primer synthesis and efficiency of primer utilization control Okazaki fragment size

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640871

Coordinated leading- and lagging-strand synthesis at the Escherichia coli DNA replication fork. I. Multiple effectors act to modulate Okazaki fragment size

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640871

The transcription factor DksA prevents conflicts between DNA replication and transcription machinery

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640871

Reconstitution of the B. subtilis replisome with 13 proteins including two distinct replicases.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640871

ppGpp inhibits the activity of Escherichia coli DnaG primase

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640871

RNA polymerase modulators and DNA repair activities resolve conflicts between DNA replication and transcription

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640871

Measuring control of transcription initiation by changing concentrations of nucleotides and their derivatives.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640871

ppGpp-mediated regulation of DNA replication and cell division in Escherichia coli.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640871

A consequence of the rel gene during a glucose to lactate downshift in Escherichia coli. The rates of ribonucleic acid synthesis.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640871

On a Test of Whether one of Two Random Variables is Stochastically Larger than the Other

20 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1111%2FMMI.12172

Individual Comparisons by Ranking Methods

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1111%2FMMI.12172

Regulation of chromosome replication in Escherichia coli: a comparison of the effects of phenethyl alcohol treatment with those of amino acid starvation

21 January 2018

1 reference

12 December 2020

Escherichia coli mutants with temperature-sensitive synthesis of DNA

1 reference

12 December 2020

Regulation of Chromosome Replication in Bacillus subtilis : Marker Frequency Analysis after Amino Acid Starvation

1 reference

12 December 2020

The mechanism of amino acid control of guanylate and adenylate biosynthesis

1 reference

12 December 2020

Guanosine polyphosphate concentration and stable RNA synthesis in Bacillus subtilis following suppression of protein synthesis

1 reference

12 December 2020

The stringent response blocks DNA replication outside the ori region in Bacillus subtilis and at the origin in Escherichia coli

1 reference

12 December 2020

Coordinated leading- and lagging-strand synthesis at the Escherichia coli DNA replication fork. V. Primase action regulates the cycle of Okazaki fragment synthesis

1 reference

12 December 2020

Identifiers

DOI

10.1111/MMI.12172

1 reference

19 September 2017

1 reference

19 September 2017

PubMed publication ID

23461544

1 reference