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Issues list

Sort overrepresented sequences by count enhancement
#37 opened Mar 10, 2018 by mblue9 updated Mar 13, 2018
1
Feature request: FASTQ read splitting/tiling
#71 opened Jul 10, 2018 by rmzelle updated Oct 12, 2018
4
discard polyG tails enhancement
#99 opened Oct 23, 2018 by githubholiday updated Oct 23, 2018
1
Feature request: Keep only adapter-containing reads
#95 opened Oct 10, 2018 by biokcb updated Nov 1, 2018
2
not detecting adapter seq
#93 opened Oct 9, 2018 by divyoj updated Nov 2, 2018
3
Question: Adapters trimming for non-ILLUMINA data?
#107 opened Nov 13, 2018 by Zjianglin updated Nov 13, 2018
4
fastp should give an error for unpaired reads
#118 opened Nov 27, 2018 by ChenfuShi updated Nov 27, 2018
2
Display results in the html report 'side by side' enhancement
#87 opened Sep 3, 2018 by fredsamhaak updated Nov 30, 2018
2
Trim Nextera mate-pair adapters enhancement
#82 opened Aug 13, 2018 by sjackman updated Dec 24, 2018
5
Most reads are not overlapping
#109 opened Nov 15, 2018 by juulluu21 updated Jan 13, 2019
6
idea: low complexity filter should depend on gc content
#76 opened Jul 29, 2018 by tseemann updated Jan 15, 2019
6
Quality filtering
#128 opened Feb 2, 2019 by kokyriakidis updated Feb 3, 2019
2
Only keep reads that contain certain sequence and allow cutting.
#141 opened Mar 13, 2019 by ghuls updated Mar 13, 2019
Extract barcodes from 10x Genomics Chromium linked reads [feature request]
#91 opened Sep 14, 2018 by sjackman updated Mar 16, 2019
4
Report polyX trim statistics. enhancement
#145 opened Mar 21, 2019 by bichkd updated Mar 27, 2019
filtering rRNA contamination ?
#149 opened Apr 3, 2019 by AgatioDev updated Apr 3, 2019
Stitch together overlapping reads? enhancement
#31 opened Mar 3, 2018 by tseemann updated Apr 8, 2019
21
cut_right not consistent
#131 opened Feb 13, 2019 by ChenfuShi updated Apr 8, 2019
8
Fastp length trimming on only one file enhancement
#94 opened Oct 9, 2018 by ghoshal updated Apr 8, 2019
1
New option for expected error enhancement
#110 opened Nov 20, 2018 by ZeweiSong updated Apr 8, 2019
2
fastp --help and fastp --version : STDOUT versus STDERR enhancement
#140 opened Mar 12, 2019 by russHyde updated Apr 23, 2019
2
Removing adaptators from Nanopore Dataset
#136 opened Feb 22, 2019 by LucoLab updated Apr 23, 2019
1
-f, --trim_front1 option gives fewer than expected counts
#155 opened May 2, 2019 by sujaikumar updated May 3, 2019
2
how does fastp deal withoverlapped bases with high quality both on read1 and read2
#157 opened May 9, 2019 by ghost updated May 9, 2019
is trimming for PE symmetrical
#158 opened May 24, 2019 by aistBMRG updated May 31, 2019
1
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