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Issues list

fastp not removing all Illumina universal adapter sequences as indicated by FastQC
#558 opened Apr 15, 2024 by luckyvivi updated May 30, 2024
4
Nanopore data filtering using fastp
#555 opened Mar 26, 2024 by emilydolivo97 updated May 28, 2024
1
Feature Request: fastp operation on input and output directories
#564 opened May 26, 2024 by SuhasSrinivasan updated May 26, 2024
UMI extraction 3' end
#494 opened May 31, 2023 by annajbott updated May 23, 2024
1
fastp trim polyG is not working when the data is large
#464 opened Feb 28, 2023 by MinBio updated May 14, 2024
2
Installing newer versions with conda
#407 opened May 11, 2022 by GHAZAL99 updated May 3, 2024
6
few options throw 'undefined error' -reg
#559 opened Apr 19, 2024 by parima678 updated Apr 19, 2024
installing fastp on M1 Macbook Pro
#420 opened Aug 2, 2022 by adamsbp updated Apr 9, 2024
15
No adapter detected for read and Q20 bases: 4747174600(99.9999%)
#557 opened Apr 8, 2024 by h20gg702 updated Apr 8, 2024
interleaved output is not reproducible with multiple threads
#552 opened Mar 15, 2024 by briankegerreis updated Apr 3, 2024
1
Not able to install on Mac book M1
#553 opened Mar 16, 2024 by ranijames updated Mar 23, 2024
4
Keep occurred error message from the beginning < igzip: invalid gzip header found >
#554 opened Mar 22, 2024 by teddy-han updated Mar 22, 2024
Split interleaved output
#551 opened Mar 12, 2024 by Poshi updated Mar 12, 2024
how many reads were polyG trimmed?
#397 opened Mar 17, 2022 by jazberna1 updated Mar 8, 2024
1
Insert size estimation and report interpretation
#536 opened Dec 11, 2023 by lmartinezgili updated Mar 7, 2024
2
Filter only one read of paired-end experiment but remove corresponding reads in other file [feature request] enhancement
#103 opened Oct 26, 2018 by romanhaa updated Mar 7, 2024
11
Store duplicate reads
#549 opened Mar 6, 2024 by johnw2358 updated Mar 6, 2024
Interpretation help file?
#548 opened Feb 28, 2024 by jullee updated Feb 28, 2024
Merged reads restricted to length of the read pairs?
#513 opened Jul 26, 2023 by robinfchan updated Feb 23, 2024
2
Low complexity filter and contaminant removal
#332 opened Apr 15, 2021 by martin-hartmann updated Feb 20, 2024
3
Missing most reads after given r2 adapter
#547 opened Feb 18, 2024 by Flying-Doggy updated Feb 19, 2024
1
"Adaptor or bad ligation of read X" report
#326 opened Mar 13, 2021 by crysclitheroe updated Feb 17, 2024
1
Not detecting the adapter in miRNAseq
#129 opened Feb 5, 2019 by ndaniel updated Feb 6, 2024
5
Feature request: add option to set lower limit of unqualified quality
#543 opened Jan 31, 2024 by ybendana updated Jan 31, 2024
Can fastq remove read sequences with duplicate IDs?
#542 opened Jan 30, 2024 by ghost updated Jan 30, 2024
ProTip! Updated in the last three days: updated:>2024-07-06.