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@OpenOmics

OpenOmics

Open Bioinformatics Research
README.md

Welcome to OpenOmics

GIF

We are a diverse group of Bioinformatics scientists, developers, and data scientists on a mission to push science forward.

We believe in open, reproducible, collaborative scientific research, and the strength of community led efforts. We recognize that together as a group we build strong. OpenOmics serves as a place to connect and engage with other community members, share ideas, and build pipelines & tools that enable the greater scientific community.

If you are a new member, welcome! Before getting started, please take a moment to read through our code of conduct. If you have any questions, please feel free to start a discussion.

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  1. genome-seek genome-seek Public

    Clinical Whole Genome and Exome Sequencing Pipeline

    Python 16 9

  2. RNA-seek RNA-seek Public

    Forked from skchronicles/RNA-seek

    A comprehensive quality-control and quantification RNA-seq pipeline

    Python 4 2

  3. modr modr Public

    An awesome Oxford Nanopore Pipeline for direct RNA-sequencing

    Python 6 1

  4. metavirs metavirs Public

    Viral Metagenomics Assembly and Annotation Pipeline

    Python 4 1

  5. chrom-seek chrom-seek Public

    An awesome set of epigenetic pipelines for bulk cfChip-seq, ChIP-seq, and ATAC-seq

    Python 3 1

  6. cell-seek cell-seek Public

    One single-cell pipeline to rule them all, one pipeline to find them, one pipeline to unify them all, and with the data bind them.

    Python 1

Repositories

Showing 10 of 40 repositories
  • genome-seek Public

    Clinical Whole Genome and Exome Sequencing Pipeline

    OpenOmics/genome-seek’s past year of commit activity
    Python 16 MIT 9 3 0 Updated Jun 28, 2024
  • methyl-seek Public

    Bisulphite-sequencing based methylation pipeline

    OpenOmics/methyl-seek’s past year of commit activity
    Python 5 MIT 3 0 1 Updated Jun 28, 2024
  • parabricks-benchmark Public

    Benchmarking parabricks GPU-accelerated tools for GATK and beyond!

    OpenOmics/parabricks-benchmark’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jun 27, 2024
  • chrom-seek Public

    An awesome set of epigenetic pipelines for bulk cfChip-seq, ChIP-seq, and ATAC-seq

    OpenOmics/chrom-seek’s past year of commit activity
    Python 3 MIT 1 12 0 Updated Jun 27, 2024
  • baseline Public template

    A BASE template for building pipeLINEs

    OpenOmics/baseline’s past year of commit activity
    Python 3 MIT 1 0 0 Updated Jun 24, 2024
  • ervx Public

    Endogenous Retrovirus Expression Pipeline for Human and Mouse for use with bulk RNA

    OpenOmics/ervx’s past year of commit activity
    Python 1 MIT 1 1 0 Updated Jun 20, 2024
  • metamorph Public

    Metagenomics and Metatranscriptomics pipeline

    OpenOmics/metamorph’s past year of commit activity
    Python 3 MIT 1 3 0 Updated Jun 14, 2024
  • scribble Public

    Scripts/code-snippets, somewhere in-between bioinformatics and data science, and oneliners

    OpenOmics/scribble’s past year of commit activity
    Python 4 MIT 3 0 0 Updated Jun 13, 2024
  • nanite Public

    A streamlined Oxford Nanopore Viral Metagenomics Pipeline

    OpenOmics/nanite’s past year of commit activity
    Python 4 MIT 2 0 0 Updated Jun 6, 2024
  • mpox-seek Public

    A rapid pipeline for targeted ONT monkeypox sequencing

    OpenOmics/mpox-seek’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Jun 6, 2024
View all repositories

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