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Starred repositories

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A jekyll based resume template

HTML 638 601 Updated Apr 3, 2024
R 1 Updated Jan 25, 2024

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

JavaScript 11,587 41,699 Updated Aug 29, 2024

Interfaces for HDF5-based Single Cell File Formats

R 142 48 Updated Nov 4, 2023
R 57 22 Updated Aug 2, 2019
Python 340 105 Updated Dec 9, 2021

Code and scripts used in analysis of snRNAseq cerebellar cortex atlas

HTML 9 3 Updated Oct 11, 2021

Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans

Python 4,524 1,648 Updated Sep 8, 2024

Comprehensive list of color palettes available in R ❤️🧡💛💚💙💜

R 1,505 136 Updated Aug 15, 2024

MOODS: Motif Occurrence Detection Suite

C++ 96 12 Updated May 16, 2023

Rmarkdown / compiled html files for human reprogramming dataset analysis

HTML 18 8 Updated Jun 11, 2020

⚡ Delightful Node.js packages and resources

57,768 5,812 Updated Aug 8, 2024

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Nextflow 857 688 Updated Sep 6, 2024

Metagenome analysis pipeline

Shell 86 66 Updated Jul 26, 2021

Mapping out the coarse-grained connectivity structures of complex manifolds.

Jupyter Notebook 199 33 Updated May 23, 2020

Manipulate CSV files on the command line using dplyr

R 269 20 Updated Feb 9, 2022

ChIP-seq peak-calling, QC and differential analysis pipeline.

Nextflow 186 145 Updated Aug 9, 2024

python数据可视化之美

Jupyter Notebook 335 214 Updated Jun 5, 2023

A curated list of awesome JupyterLab extensions and resources

2,510 155 Updated Nov 3, 2022

Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

Jupyter Notebook 1,349 448 Updated Dec 11, 2022

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

3,112 961 Updated Sep 4, 2024

Gentelella template powered by Flask

HTML 573 193 Updated Jun 21, 2022

A curated list of awesome Flask resources and plugins

12,143 1,583 Updated Aug 18, 2024

Implementation of Music Generation in PyTorch

Jupyter Notebook 38 3 Updated Jun 27, 2019

Lyrics and piano music generation in Pytorch

Jupyter Notebook 108 25 Updated Jan 28, 2018

Build your neural network easy and fast, 莫烦Python中文教学

Jupyter Notebook 8,089 3,119 Updated Mar 23, 2023
Python 4 Updated Aug 17, 2018

Pipelines for various omics analysis

Python 1 Updated Aug 5, 2019

Performant Pythonic GenomicRanges

Python 436 46 Updated Jun 4, 2024

Comparison of PCA and t-SNE

Python 1 Updated Aug 20, 2018
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