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refactor: use attributes #53

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refactor: use attributes #53

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8d4b417
feat: updated most features (ex. connectivity, bold)
xgui3783 May 23, 2024
64fb5dd
feat: updated space to new schema
xgui3783 May 23, 2024
d15ad22
convert parcellations to attribute system
AhmetNSimsek May 23, 2024
4935823
fix: archive_options
xgui3783 May 23, 2024
56e6e27
fix: publication -> url/doi
xgui3783 May 23, 2024
20c025d
fix: space publication
xgui3783 May 24, 2024
b53f914
fix: dx.doi.org -> doi.org
xgui3783 May 24, 2024
c10f202
fix archive schema
xgui3783 May 27, 2024
0c81587
refactor: converted cnmtx to ecs
xgui3783 May 29, 2024
4d9fc4d
readd shortnames for spaces
AhmetNSimsek Jun 5, 2024
4d977ac
cell density: added aggregate by
xgui3783 Jun 7, 2024
77016e6
fix space_id in layerboundary
xgui3783 Jun 7, 2024
b23b8b0
convert maps to attribute system
AhmetNSimsek Jun 11, 2024
8c74629
Revert "convert maps to attribute system"
AhmetNSimsek Jun 12, 2024
a2831be
visf atlas: remove temp provider in data-proxy
AhmetNSimsek Jun 12, 2024
97ed4a0
convert maps to attribute system
AhmetNSimsek Jun 13, 2024
a203a84
Revert "convert maps to attribute system"
AhmetNSimsek Jun 13, 2024
69e7640
convert maps to attribute system
AhmetNSimsek Jun 13, 2024
0402df2
fix: aggregate by
xgui3783 Jun 13, 2024
d2c2626
fix icbm zip file
xgui3783 Jun 14, 2024
f7f324f
fix: add matrix to connectivity data
xgui3783 Jun 17, 2024
5e31a4c
correct version value for jba 3.1
AhmetNSimsek Jun 24, 2024
aaa50c5
Use mesh attributes for volumes with mesh format
AhmetNSimsek Jul 2, 2024
35fb6f1
Revert map config conversion to attribute system
AhmetNSimsek Jul 3, 2024
02c0f98
Update jba3.1 prerelase to EBRAINS release version
AhmetNSimsek Jul 3, 2024
690b438
reconvert jba 3.1 and 3.0.3 parc configs to attribute collection
AhmetNSimsek Jul 3, 2024
4d3f215
Convert maps to attribute collection
AhmetNSimsek Jul 3, 2024
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Update jba3.1 prerelase to EBRAINS release version
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@AhmetNSimsek
AhmetNSimsek committed Jul 3, 2024
commit 02c0f98c1258d7d200c9b55581b1b0e1775f8b89
614 changes: 314 additions & 300 deletions maps/colin27-jba31-labelled.json
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4,550 changes: 0 additions & 4,550 deletions maps/colin27-jba31_206-continuous.json
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4,572 changes: 4,572 additions & 0 deletions maps/colin27-jba31_207-continuous.json
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4,990 changes: 0 additions & 4,990 deletions maps/colin27-jba31_226-continuous.json
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5,012 changes: 5,012 additions & 0 deletions maps/colin27-jba31_227-continuous.json
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78 changes: 24 additions & 54 deletions maps/fsaverage-jba31-labelled.json
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Original file line number Diff line number Diff line change
Expand Up @@ -10,8 +10,8 @@
"@type": "siibra/volume/v0.0.1",
"providers": {
"gii-label": {
"left hemisphere": "https://data-proxy.ebrains.eu/api/v1/buckets/reference-atlas-data/temp/JulichBrainAtlas_3.1/fsaverage_surface/lh.JulichBrainAtlas_3.1_colin27.label.gii",
"right hemisphere": "https://data-proxy.ebrains.eu/api/v1/buckets/reference-atlas-data/temp/JulichBrainAtlas_3.1/fsaverage_surface/rh.JulichBrainAtlas_3.1_colin27.label.gii"
"left hemisphere": "https://data-proxy.ebrains.eu/api/v1/public/buckets/d-f1fe19e8-99bd-44bc-9616-a52850680777/fsaverage_surface/lh.JulichBrainAtlas_3.1.label.gii",
"right hemisphere": "https://data-proxy.ebrains.eu/api/v1/public/buckets/d-f1fe19e8-99bd-44bc-9616-a52850680777/fsaverage_surface/rh.JulichBrainAtlas_3.1.label.gii"
}
}
}
Expand Down Expand Up @@ -102,7 +102,7 @@
"fragment": "left hemisphere"
}
],
"Area TPJ (STG,SMG) - left hemisphere": [
"Area TPJ (STG, SMG) - left hemisphere": [
{
"volume": 0,
"label": 13,
Expand Down Expand Up @@ -564,14 +564,14 @@
"fragment": "left hemisphere"
}
],
"Area IFJ1 (IFS,PreCS) - left hemisphere": [
"Area IFJ1 (IFS, PreCS) - left hemisphere": [
{
"volume": 0,
"label": 79,
"fragment": "left hemisphere"
}
],
"Area IFJ2 (IFS,PreCS) - left hemisphere": [
"Area IFJ2 (IFS, PreCS) - left hemisphere": [
{
"volume": 0,
"label": 80,
Expand Down Expand Up @@ -823,7 +823,7 @@
"fragment": "left hemisphere"
}
],
"Area 6v0 (PreCG) - left hemisphere": [
"Area 6v2 (PreCG) - left hemisphere": [
{
"volume": 0,
"label": 116,
Expand Down Expand Up @@ -942,7 +942,7 @@
"fragment": "left hemisphere"
}
],
"Area FG5 (FusG) - left hemisphere": [
"Area FG5 (FusG) - left hemisphere": [
{
"volume": 0,
"label": 133,
Expand Down Expand Up @@ -1005,7 +1005,7 @@
"fragment": "left hemisphere"
}
],
"Area SFG3 (SFG - left hemisphere": [
"Area SFG3 (SFG) - left hemisphere": [
{
"volume": 0,
"label": 142,
Expand All @@ -1026,13 +1026,20 @@
"fragment": "left hemisphere"
}
],
"Area MFG5 (MFG,IFG) - left hemisphere": [
"Area MFG5 (MFG, IFG) - left hemisphere": [
{
"volume": 0,
"label": 145,
"fragment": "left hemisphere"
}
],
"Area 6v3 (PreCG) - left hemisphere": [
{
"volume": 0,
"label": 146,
"fragment": "left hemisphere"
}
],
"Area 45 (IFG) - right hemisphere": [
{
"volume": 0,
Expand Down Expand Up @@ -1117,7 +1124,7 @@
"fragment": "right hemisphere"
}
],
"Area TPJ (STG,SMG) - right hemisphere": [
"Area TPJ (STG, SMG) - right hemisphere": [
{
"volume": 0,
"label": 13,
Expand Down Expand Up @@ -1579,14 +1586,14 @@
"fragment": "right hemisphere"
}
],
"Area IFJ1 (IFS,PreCS) - right hemisphere": [
"Area IFJ1 (IFS, PreCS) - right hemisphere": [
{
"volume": 0,
"label": 79,
"fragment": "right hemisphere"
}
],
"Area IFJ2 (IFS,PreCS) - right hemisphere": [
"Area IFJ2 (IFS, PreCS) - right hemisphere": [
{
"volume": 0,
"label": 80,
Expand Down Expand Up @@ -1838,7 +1845,7 @@
"fragment": "right hemisphere"
}
],
"Area 6v0 (PreCG) - right hemisphere": [
"Area 6v2 (PreCG) - right hemisphere": [
{
"volume": 0,
"label": 116,
Expand Down Expand Up @@ -1957,7 +1964,7 @@
"fragment": "right hemisphere"
}
],
"Area FG5 (FusG) - right hemisphere": [
"Area FG5 (FusG) - right hemisphere": [
{
"volume": 0,
"label": 133,
Expand Down Expand Up @@ -2020,7 +2027,7 @@
"fragment": "right hemisphere"
}
],
"Area SFG3 (SFG - right hemisphere": [
"Area SFG3 (SFG) - right hemisphere": [
{
"volume": 0,
"label": 142,
Expand All @@ -2041,54 +2048,17 @@
"fragment": "right hemisphere"
}
],
"Area MFG5 (MFG,IFG) - right hemisphere": [
"Area MFG5 (MFG, IFG) - right hemisphere": [
{
"volume": 0,
"label": 145,
"fragment": "right hemisphere"
}
]
},
"unmappedIndicies": {
"Unknown - left hemisphere": [
{
"volume": 0,
"label": 0,
"fragment": "left hemisphere"
}
],
"Unknown - right hemisphere": [
{
"volume": 0,
"label": 0,
"fragment": "right hemisphere"
}
],
"CorpusCallosumMask - left hemisphere": [
"Area 6v3 (PreCG) - right hemisphere": [
{
"volume": 0,
"label": 146,
"fragment": "left hemisphere"
}
],
"BrainStemMask - left hemisphere": [
{
"volume": 0,
"label": 147,
"fragment": "left hemisphere"
}
],
"CorpusCallosumMask - right hemisphere": [
{
"volume": 0,
"label": 146,
"fragment": "right hemisphere"
}
],
"BrainStemMask - right hemisphere": [
{
"volume": 0,
"label": 147,
"fragment": "right hemisphere"
}
]
Expand Down
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