[go: nahoru, domu]
Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Migrate MCMC notebook to gpflow2.0 #1100

Merged
merged 24 commits into from
Nov 13, 2019
Merged

Migrate MCMC notebook to gpflow2.0 #1100

Changes from 1 commit
Commits
Show all changes
24 commits
Select commit Hold shift + click to select a range
8910b50
MCMC helper
awav Oct 7, 2019
36c1a01
Update docstring of the helper
awav Oct 7, 2019
55ee586
Port MCMC notebook to gpflow2.0
Oct 14, 2019
c717d60
Committing a full run, with all plots
Oct 14, 2019
f622923
Merge branch 'develop-2.0' of github.com:GPflow/GPflow into eric/deve…
Oct 14, 2019
63a0cdf
remove item from blacklist
Oct 14, 2019
f24528e
Apply suggestions from code review
cdmatters Oct 15, 2019
607d652
Merge branch 'develop-2.0' into eric/develop-2.0/hmc-helper
st-- Oct 22, 2019
9a6ca3f
Merge branch 'develop-2.0' into eric/develop-2.0/hmc-helper
cdmatters Oct 31, 2019
32d45df
remove whitespace changes
Oct 31, 2019
2866e2c
save
Oct 31, 2019
e8acd20
just need to update docstring
Oct 31, 2019
1984b79
fixup
Oct 31, 2019
1aee905
Merge branch 'develop-2.0' into eric/develop-2.0/hmc-helper
cdmatters Nov 1, 2019
1631868
Merge branch 'develop' into eric/develop-2.0/hmc-helper
awav Nov 11, 2019
196467f
fixup changes from Artem
Nov 12, 2019
00bc7b7
Update gpflow/optimizers/mcmc.py
cdmatters Nov 13, 2019
fc04378
fixing rename of function
Nov 13, 2019
231ff0d
Apply suggestions from code review
awav Nov 13, 2019
a393f3f
Update gpflow/optimizers/mcmc.py
awav Nov 13, 2019
35f2073
Merge branch 'eric/develop-2.0/hmc-helper' of github.com:GPflow/GPflo…
Nov 13, 2019
e2fc15d
added tests
Nov 13, 2019
b432a4f
make tests run faster with fewer sample steps
Nov 13, 2019
0db2ea0
test the wrapped closure
Nov 13, 2019
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
Prev Previous commit
test the wrapped closure
  • Loading branch information
Eric Hambro committed Nov 13, 2019
commit 0db2ea0236a9f1440a3fdb27218f7e2a7989ecb9
5 changes: 5 additions & 0 deletions tests/test_mcmc_helper.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -58,6 +58,11 @@ def test_mcmc_helper_target_function():

assert model.log_marginal_likelihood() == target_log_prob_fn()

# test the wrapped closure
log_prob, grad_fn = target_log_prob_fn.__original_wrapped__()
grad, nones = grad_fn(1, [None] * len(model.trainable_parameters))
assert len(grad) == len(model.trainable_parameters)
assert nones == [None] * len(model.trainable_parameters)

def test_mcmc_sampler_integration():
data = build_data()
Expand Down