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@IARCbioinfo

IARC bioinformatics platform

International Agency for Research on Cancer bioinformatics platform

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  1. IARC-nf IARC-nf Public

    List of IARC bioinformatics nextflow pipelines

    44 10

  2. needlestack needlestack Public

    Multi-sample somatic variant caller

    R 47 14

  3. mutspec mutspec Public

    Mutation Spectra Analysis

    Perl 10 2

  4. alignment-nf alignment-nf Public

    Whole Exome/Whole Genome Sequencing alignment pipeline

    Nextflow 25 12

  5. RNAseq-nf RNAseq-nf Public

    RNAseq analysis pipeline

    HTML 22 7

  6. mutect-nf mutect-nf Public

    Mutect pipeline with Nextflow

    Nextflow 9 7

Repositories

Showing 10 of 115 repositories
  • MS_SVA Public

    Repository with code used to produce the figures from Morrison et al. doi.org/10.1101/2023.11.23.23298821

    IARCbioinfo/MS_SVA’s past year of commit activity
    HTML 0 GPL-3.0 0 0 0 Updated Jun 26, 2024
  • numbat-nf Public

    Nextflow pipeline to run the numbat somatic copy number variant detection method on single-cell or spatial transcriptomics data

    IARCbioinfo/numbat-nf’s past year of commit activity
    HTML 0 GPL-3.0 0 0 0 Updated Jun 24, 2024
  • medical_genomics_course Public

    Material for medical genomics course

    IARCbioinfo/medical_genomics_course’s past year of commit activity
    Dockerfile 7 GPL-3.0 5 1 0 Updated Jun 12, 2024
  • methylkey Public
    IARCbioinfo/methylkey’s past year of commit activity
    R 2 3 0 0 Updated Jun 4, 2024
  • IARC-nf Public

    List of IARC bioinformatics nextflow pipelines

    IARCbioinfo/IARC-nf’s past year of commit activity
    44 GPL-3.0 10 0 0 Updated May 21, 2024
  • gene-fusions-nf Public

    A nextflow pipeline to call somatic gene fusions

    IARCbioinfo/gene-fusions-nf’s past year of commit activity
    Nextflow 1 MIT 1 0 1 Updated May 20, 2024
  • metagenomics-nf Public

    Nextflow pipeline to perform metagenomic analyses from next-generation sequencing data

    IARCbioinfo/metagenomics-nf’s past year of commit activity
    Nextflow 0 GPL-3.0 0 0 0 Updated May 7, 2024
  • bam2cram-nf Public

    A repository to convert BAM->CRAM files

    IARCbioinfo/bam2cram-nf’s past year of commit activity
    Nextflow 0 MIT 1 0 1 Updated May 1, 2024
  • mutect-nf Public

    Mutect pipeline with Nextflow

    IARCbioinfo/mutect-nf’s past year of commit activity
    Nextflow 9 GPL-3.0 7 0 0 Updated Apr 30, 2024
  • purple-nf Public

    Nextflow pipeline for CNV calling with PURPLE

    IARCbioinfo/purple-nf’s past year of commit activity
    Nextflow 3 MIT 1 0 0 Updated Apr 29, 2024
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