add tests to check to make sure that the static and shared libs can b…

…e used properly
TravisWheelerLab · Feb 8, 2024 · cd8ada2 · cd8ada2
1 parent ac22bd4
commit cd8ada2
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diff --git a/test/sharedLibTest/awfmiTest.c b/test/sharedLibTest/awfmiTest.c
@@ -0,0 +1,31 @@
+#include "AwFmIndex.h"
+#include <stdint.h>
+#include <string.h>
+#include <stdio.h>
+#include <stdlib.h>
+
+int main(int argc, char **argv)
+{
+    struct AwFmIndex *index;
+
+    struct AwFmIndexConfiguration config;
+    config.suffixArrayCompressionRatio = 2;
+	config.kmerLengthInSeedTable = 2;
+	config.alphabetType = AwFmAlphabetDna;
+	config.keepSuffixArrayInMemory = true;
+	config.storeOriginalSequence = false;
+
+    enum AwFmReturnCode awfmrc = awFmCreateIndexFromFasta(&index,& config, "test.fa", "output.awfmi");
+
+    if (awFmReturnCodeIsFailure(awfmrc))
+    {
+        printf("ERROR: createIndex returned error code %u\n", awfmrc);
+        exit(-1);
+    }
+    else
+    {
+        printf("createIndex successful\n");
+    }
+
+    awFmDeallocIndex(index);
+}
diff --git a/test/sharedLibTest/makefile b/test/sharedLibTest/makefile
@@ -0,0 +1,14 @@
+TEST_SRC = awfmiTest.c
+
+CFLAGS = -std=c11 -Wall -mtune=native -fopenmp -mavx2 -O3
+LDLIBS = -lawfmindex
+
+EXE = sharedLibTest.out
+
+sharedLibTest: $(TEST_SRC)
+	if [ -z "$$LD_LIBRARY_PATH" ]; then export LD_LIBRARY_PATH=/usr/local/lib; fi
+	gcc $(TEST_SRC)  -o $(EXE) $(CFLAGS) $(LDLIBS)
+
+.PHONY: clean
+clean:
+	rm -f $(EXE)
diff --git a/test/sharedLibTest/test.fa b/test/sharedLibTest/test.fa
@@ -0,0 +1,2 @@
+>test 1 header
+test1sequencedataagasfnlawebrfilqawhbefrilahwbseflikhabsdlfikhbas
diff --git a/test/staticLibTest/awfmiTest.c b/test/staticLibTest/awfmiTest.c
@@ -0,0 +1,32 @@
+#include "AwFmIndex.h"
+#include <stdint.h>
+#include <string.h>
+#include <stdio.h>
+#include <stdlib.h>
+
+int main(int argc, char **argv)
+{
+
+    struct AwFmIndex *index;
+
+    struct AwFmIndexConfiguration config;
+    config.suffixArrayCompressionRatio = 2;
+	config.kmerLengthInSeedTable = 2;
+	config.alphabetType = AwFmAlphabetDna;
+	config.keepSuffixArrayInMemory = true;
+	config.storeOriginalSequence = false;
+
+    enum AwFmReturnCode awfmrc = awFmCreateIndexFromFasta(&index,& config, "test.fa", "output.awfmi");
+
+    if (awFmReturnCodeIsFailure(awfmrc))
+    {
+        printf("ERROR: createIndex returned error code %u\n", awfmrc);
+        exit(-1);
+    }
+    else
+    {
+        printf("createIndex successful\n");
+    }
+
+    awFmDeallocIndex(index);
+}
diff --git a/test/staticLibTest/makefile b/test/staticLibTest/makefile
@@ -0,0 +1,14 @@
+TEST_SRC = awfmiTest.c
+
+CFLAGS = -std=c11 -Wall -mtune=native -fopenmp -mavx2 -O3
+LDFLAGS = -L../../build
+LDLIBS = -lawfmindex
+
+EXE = staticLibTest.out
+
+staticLibTest: $(TEST_SRC)
+	gcc $(TEST_SRC) $(LDFLAGS)  -o $(EXE) $(CFLAGS) $(LDLIBS)
+
+.PHONY: clean
+clean:
+	rm -f $(EXE)
diff --git a/test/staticLibTest/test.fa b/test/staticLibTest/test.fa
@@ -0,0 +1,2 @@
+>test 1 header
+test1sequencedataagasfnlawebrfilqawhbefrilahwbseflikhabsdlfikhbas