A python library for interacting with GCS, Cromwell, and Terra

A structural variation pipeline for short-read sequencing

A brew tap for tools and formula that DSP uses that aren't ready for publishing to homebrew-core

Structural variant merging tool

Structural variant detection and association testing

C library for high-throughput sequencing data formats

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

CLI for interacting with Cromwell servers

Scalable reporting of Cromwell task call resource monitoring data to BigQuery

A collection of Python clients and accessory scripts for interacting with the Cromwell

Official code repository for GATK versions 4 and up