MPBoot: Fast phylogenetic maximum parsimony tree inference and bootstrap approximation

• Clone the source code, unzip it, and rename to source
• Create folder build outside folder source
• Change directory to build
• Run cmake command:

cmake ../source -DIQTREE_FLAGS=sse4 -DCMAKE_C_COMPILER=clang -DCMAKE_CXX_COMPILER=clang++

• Replace sse4 by avx in above command if you decide to run MPBoot on AVX architecture
• Run make
• You will find the executable named mpboot once the make command is done.

COMPILING INSTRUCTION PRIOR TO 2020

• Clone the source code, unzip it, and rename to source
• Change directory to source, run following commands to update the sub-repository

       git submodule init

       git submodule update

       cd pllrepo

       git checkout subufbootmp

• Create folder build outside folder source
• Change directory to build
• Run cmake command:

cmake ../source -DIQTREE_FLAGS=sse4 -DCMAKE_C_COMPILER=clang -DCMAKE_CXX_COMPILER=clang++

• Replace sse4 by avx in above command if you decide to run MPBoot on AVX architecture
• Run make
• You will find the executable named mpboot once the make command is done.