Bioinformatician and Data Scientist.
Expertise in omics applications (e.g. metagenomics, RNA-Seq, scRNA-Seq) using CLI, R, Python, Snakemake, Bash etc.
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Interfaculty Bioinformatics Unit, University of Bern
- Bern
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BioinformaticsTools
BioinformaticsTools PublicA collection of bioinformatics tools using python, R and bash.
Jupyter Notebook
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genome_assembly_pipeline
genome_assembly_pipeline PublicSnakemake pipeline for assembling and annotating bacterial genomes from NGS paired-end data.
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