This is a personal template for National Bioinformatics Infrastructure Sweden (NBIS) support projects. It is an evolving method of working as I gain experience and find better ways of working. See the template website for how I use this template.
- NBIS Project ID:
- NBIS experts: Mahesh Binzer-Panchal (mahesh.binzer-panchal@nbis.se)
- Request by: ()
- Principal Investigator: ()
Expert Affiliation:
Mahesh Binzer-Panchal
Department of Medical Biochemistry and Microbiology,
National Bioinformatics Infrastructure Sweden (NBIS),
Science for Life Laboratory,
Uppsala Universitet,
Uppsala,
Sweden
ORCID = https://orcid.org/0000-0003-1675-0677
NBIS Project support request:
NBIS Agreement: ( XX hrs)
- <Agreed outcome 1>
- <Agreed outcome 2>
/proj/naiss20XX-YY-ZZ/NBIS_support_<id>/ (NAISS Compute Allocation)
|
| - README.md Project details summary
|
| - analyses/ Analysis launch scripts
| - conda/ Shared conda environments
| - docs/ Project documentation
\ - workflow/ Nextflow workflow
/proj/naiss20xx-yy-zz/ (NAISS Storage Allocation)
|
| - nobackup/nxf-work Intermediate computations
\ - NBIS_support_<id>_data/ Project data
| - deliveries Sequence deliveries
| - raw-data Reorganised input data
| - outputs Analysis/workflow outputs
\ - frozen Data to publish
Quickstart:
cd /proj/naiss20XX-YY-ZZ/NBIS_support_<id>/analyses/<analysis>/
./run_nextflow.shA description of the workflow stages is provided in the Project Report.
Workflow parameter options and outputs are detailed in the workflow README.