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Zero reads found in index file
troubleshooting
workflow and data preparation questions
#239
opened Jul 26, 2024 by
esh97
What positions are included in bedMethyl files? Should there be only C in a 5mC_5hmC model bedMethyl file?
troubleshooting
workflow and data preparation questions
#238
opened Jul 23, 2024 by
Adinivich
Ignore multiple mods in adjust-mods
enhancement
New feature or request
#237
opened Jul 22, 2024 by
Ge0rges
Support for generic MM tags?
enhancement
New feature or request
#235
opened Jul 19, 2024 by
ADHDrian
modkit results look off for CHG and CHH contexts - plant methylation
troubleshooting
workflow and data preparation questions
#234
opened Jul 19, 2024 by
colindaven
Request: consider adding threading to output BAM compression
enhancement
New feature or request
#233
opened Jul 16, 2024 by
mrvollger
dmr multi doesn't handle replicates
DMR
modkit dmr
enhancement
New feature or request
#232
opened Jul 15, 2024 by
Ge0rges
Parsing input error
logging
Additional information should be logged
#231
opened Jul 15, 2024 by
Ge0rges
Version mismatch
troubleshooting
workflow and data preparation questions
#226
opened Jul 7, 2024 by
rugilemat
Find-motifs error: memory allocation of 61203283984 bytes failed
troubleshooting
workflow and data preparation questions
#225
opened Jul 5, 2024 by
hassebossenbroek
Criteria for deciding whether a position is methylated
question
Looking for clarification on inputs and/or outputs
#224
opened Jul 5, 2024 by
angelluigi
Much lower pass rate of 5hmC calls than 5mC calls
question
Looking for clarification on inputs and/or outputs
#222
opened Jul 2, 2024 by
hassebossenbroek
How to interpret failed reads during modkit extract
troubleshooting
workflow and data preparation questions
#220
opened Jun 29, 2024 by
lkwhite
Where does P(canonical) come from?
question
Looking for clarification on inputs and/or outputs
#219
opened Jun 27, 2024 by
lkwhite
Problem interpretating table
question
Looking for clarification on inputs and/or outputs
#217
opened Jun 21, 2024 by
MarioRinBarr
bedMethyl file has no motif information
question
Looking for clarification on inputs and/or outputs
#216
opened Jun 20, 2024 by
uuwuyi
entropy vs sequencing depth/CG content
question
Looking for clarification on inputs and/or outputs
#214
opened Jun 20, 2024 by
ywang285
Zero reads in index error
troubleshooting
workflow and data preparation questions
#211
opened Jun 19, 2024 by
setshabaTaukobong
bedgraph and bedmethyl only-tab simultaneously
enhancement
New feature or request
#210
opened Jun 18, 2024 by
ShokodkoMariia
Error! Parsing Error: Error { input: "m\t1", code: Digit }
troubleshooting
workflow and data preparation questions
#209
opened Jun 18, 2024 by
saky7009
Can you please suggest me ..How can I visualized differential methylation result?
#199
opened Jun 6, 2024 by
saky7009
Are all CpG reported ?
question
Looking for clarification on inputs and/or outputs
#192
opened May 28, 2024 by
OceaneMion
Clarifications on DMR Analysis
DMR
modkit dmr
question
Looking for clarification on inputs and/or outputs
#191
opened May 27, 2024 by
Proy321
How does Modkit handle Large Genome Data?
question
Looking for clarification on inputs and/or outputs
troubleshooting
workflow and data preparation questions
#190
opened May 27, 2024 by
Yang990-sys
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